Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18260 992 / 0 HRD3A, EBS5 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) AT1G73570 785 / 0 HCP-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046300 [exp] 1188 / 0 AT1G18260 949 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Potri.008G187200 [exp] 48 / 1e-05 AT1G70590 405 / 5e-142 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009042 [exp] 1099 / 0 AT1G18260 1020 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009680 [exp] 1092 / 0 AT1G18260 1010 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009047 [exp] 162 / 3e-46 AT1G18260 162 / 8e-47 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009046 [exp] 0 / 1 AT1G18260 50 / 5e-12 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08238 [poplar] [flax] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Potri.015G038100.1 pacid=42775395 polypeptide=Potri.015G038100.1.p locus=Potri.015G038100 ID=Potri.015G038100.1.v4.1 annot-version=v4.1 ATGCAGAAATACAATCTCACTCTCTCTCTCCTAATTTTCTCTCTCCTCCCCCCATCTCTCCTCGCCGGCCCATTCGTTCTCATCCTCTCACAAGACGACC TTAAAGACATCCCTTCCTCCGCCACCACCACCGATGCTGACCCCGCTGAGTCACTGCCCGAGTGGGACGAGTTCGGCGACTCCGACTCCAAACCCGAACA CGAACTCGAACCTGGCTCCTGGCGCCCGATCTTTGAACCCGACGCCGTCAATTCCTCCACCTCCGAATCGAAACTCGATACGGAGATGGAGCAGTATTAC TCCGCCGTGGAGAAGATGTTGTCGGCGGTGAGTGACGGCGAGGTTGGAGTTATTGAGGAATCAGTGGCGGAAATTGAGGAATTGGCGAGTGTGAAGGGGA ATTCGCATGCCCAATCGGTTTTAGGGTTTTTGTATGGGTTAGGGCAAATTAAAGAGAGGAATAAAGCTAAGGCTTTTTTGTATCATAATTTCGCGGCCAA GGGAGGCAATTTGCAGTCTAAACTGGCTATTGCCTACACTTATTACCGGCAGCACATGTATGAAAAGGCAGTTAAATTATATGCGGAATTAGCAGAAGTA GCAGTAAATAGTTTTTTGATTTCAAAGTATTCTCCCGTGATTGAACCAGTTAGGATACATAATGGGGCTGAGGAGAATAAGGAGGCCTTGAGGAAATCAC GAGGGGAGGATGATGACGTGTTCCAGATTTTGGAATATCAAGCTCAAAAAGGGAATGCAGGTGCTATGTATAAAATTGGGTATTTTTACTACTTTGGATT AAGAGGATTGAGGCGTGATCATGCTAAAGCATTGGCATGGTTCTCAAAGGCTGTGGAGAAAGGGGAACCTAGATCAATGGAACTTCTTGGTGAAATATAT GCGCGGGGAGCTGGAGTTGAGAGGAATTATACTAAAGCGCTTGAATGGCTTACACTTGCAGCAAAACAGCAGCTTTATTCGGCTTATAATGGCATGGGGT ATTTGTATGTCAAGGGCTATGGAGTGGAAAAGAAGAACTACACTAAAGCAAAAGAATACTTTGAGAGGGCTGCTGACAATGAAGATGCTGGTGGGCACTA TAACCTTGGAGTAATACATCTTAAAGGGATTGGGGTAAAGAGAGATGTAAAGCTAGCATGCCAATATTTTATAGTAGCTGCTAATGCAGGTCAACCAAAG GCATTTTACCAGCTGGCAAAGATGTTTCATAAGGGTGTGGGGCTTAAAAAGAATCTTCCTATGGCTACTGGATTATACAAACTAGTAGCAGAACGAGGCC CATGGAACTCCTTGTCTAGATGGGCATTGGAATCATACCTAAAAGGCAATGTAGGCAAAGCATCCTTGTTGTATTCAAGGATGGCTGAGCTGGGCTATGA GATTGCACAAAGTAATGCTGCATGGATTCTTGACAAATATGCAGAGCATAGCATGTGCGTGGGAGAATCTGGATTTTGTACAGATTCAGAAAGACACCAG CGGGCTCATTCTTTGTGGTGGGAAGCTTCAGAGCAGGGTAATGAACATGCTGCTTTGCTGATTGGTGATGCATATTACTATGGTCGGGGCACTGTGAGGG ATTATGAACGAGCAGCAGAGGCTTACATGCATGCCAAATCTCAATCTAATGCACAAGCTATGTTCAATCTTGGTTACATGCATGAGCATGGTAAAGGACT TCCATTTGACCTTCATCTTGCCAAGCGATACTATGACCAAGCTCTAGAGATCGATTCTGCAGCAAAGTTACCTGTCACACTGGCCCTCACAAGCTTGTGG ATAAGAAAGAACTACGCAGACAGTGTCATGGTACACGTGATTGATTCATTGCCTGAATTCTATCCAAAAATCGAAGCATGGGTGGAGAATGTTATCCTGG AAGAAGGGAATGCAACAATACTTACTCTATTTGTCTGTCTTCTTACGGTTCTCTATTTTCGTGAAAGGCAACGCAGGAATGCTGGTGTTGCTGCTGGTGA GGTTGGCATACCAGACCAACCTATCGAGCATGCTCCTCCTGCACCTAATTAG
AA sequence Show only first row Show all	>Potri.015G038100.1 pacid=42775395 polypeptide=Potri.015G038100.1.p locus=Potri.015G038100 ID=Potri.015G038100.1.v4.1 annot-version=v4.1 MQKYNLTLSLLIFSLLPPSLLAGPFVLILSQDDLKDIPSSATTTDADPAESLPEWDEFGDSDSKPEHELEPGSWRPIFEPDAVNSSTSESKLDTEMEQYY SAVEKMLSAVSDGEVGVIEESVAEIEELASVKGNSHAQSVLGFLYGLGQIKERNKAKAFLYHNFAAKGGNLQSKLAIAYTYYRQHMYEKAVKLYAELAEV AVNSFLISKYSPVIEPVRIHNGAEENKEALRKSRGEDDDVFQILEYQAQKGNAGAMYKIGYFYYFGLRGLRRDHAKALAWFSKAVEKGEPRSMELLGEIY ARGAGVERNYTKALEWLTLAAKQQLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFERAADNEDAGGHYNLGVIHLKGIGVKRDVKLACQYFIVAANAGQPK AFYQLAKMFHKGVGLKKNLPMATGLYKLVAERGPWNSLSRWALESYLKGNVGKASLLYSRMAELGYEIAQSNAAWILDKYAEHSMCVGESGFCTDSERHQ RAHSLWWEASEQGNEHAALLIGDAYYYGRGTVRDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGKGLPFDLHLAKRYYDQALEIDSAAKLPVTLALTSLW IRKNYADSVMVHVIDSLPEFYPKIEAWVENVILEEGNATILTLFVCLLTVLYFRERQRRNAGVAAGEVGIPDQPIEHAPPAPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.015G038100 [exp]	0	1
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.010G053400 [exp]	2.23	0.9349
AT2G20560			DNAJ heat shock family protein...		Potri.007G136700 [exp]	3.16	0.9266
AT1G26800			RING/U-box superfamily protein...		Potri.010G168300 [exp]	7.14	0.9174
AT3G05500			Rubber elongation factor prote...		Potri.005G025700 [exp]	8.00	0.8359	Pt-SRPP.3
AT5G65490			unknown protein		Potri.006G134400 [exp]	11.31	0.9112
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Potri.006G262700 [exp]	12.32	0.8979
AT2G27285			Coiled-coil domain-containing ...		Potri.009G162500 [exp]	13.63	0.8111
AT5G07120		SNX2b	sorting nexin 2B (.1)		Potri.019G124200 [exp]	17.94	0.7756
AT5G20620		UBQ4	ubiquitin 4 (.1)		Potri.006G129600 [exp]	18.00	0.9068	SUBI.10
AT1G16740			Ribosomal protein L20 (.1)		Potri.004G095475 [exp]	19.79	0.9058

Compare expression of checked genes

Potri.015G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.