Plant FIBer expression Database

Potri.015G038300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42150 387 / 1e-135 Glutathione S-transferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G046600
[exp]
506 / 0 AT5G42150 407 / 2e-143 Glutathione S-transferase family protein (.1)
Potri.005G242500
[exp]
397 / 4e-139 AT5G42150 458 / 1e-163 Glutathione S-transferase family protein (.1)
Potri.015G078900
[exp]
41 / 0.0002 AT5G63030 171 / 3e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1)
Potri.012G082800
[exp]
40 / 0.0005 AT5G63030 155 / 6e-50 glutaredoxin C1, Thioredoxin superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013568
[exp]
390 / 2e-136 AT5G42150 459 / 8e-164 Glutathione S-transferase family protein (.1)
Lus10017275
[exp]
390 / 2e-136 AT5G42150 454 / 9e-162 Glutathione S-transferase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF13417 GST_N_3 Glutathione S-transferase, N-terminal domain
CL0497 GST_C PF14497 GST_C_3 Glutathione S-transferase, C-terminal domain
Representative CDS sequence
>Potri.015G038300.1 pacid=42775151 polypeptide=Potri.015G038300.1.p locus=Potri.015G038300 ID=Potri.015G038300.1.v4.1 annot-version=v4.1
ATGAGAAGAGCGTCGACTCTCGCGTCTTCCGTCCTCTCTCGGACCCTCTCCTCCACCCTCCACGATTGCAGTGGCCTCTCCACCACCTCAGCTGCTACCA
TCAACCACCGCTTCCTCCATGCTGCACTCTTTAGCACCACCACCAGCACTGGCAGTTCCAGCACTCGCCGGATCTTCAATCCTTTCTCCACATATCTCGG
TGTCGCGGGAGCCTTGGTCTCTGCCGCCGCCGCCGCTTCTCTCTCTCAAGAAGTCCTCGCCAAGGAGCCACCACCGGCCGAGCTCGTGCCCAAGGAAGTT
GTTCTTTATCAGTATGAGGCCTGTCCTTTCTGCAATAAAGTTAAAGCATATTTGGATTACTATGATATACCATACAAAGTGGTGGAAGTGAATCCTATTA
GTAAGAAAGAGATCAAATGGTCTGATTATAAGAAGGTACCTATTTTGTTGGTAGATGGCGAACAGCTTGTTGATTCTTCAGCTATAATTGATAAGTTGGG
AAACAAGATCCATGGTAAGGAAATTGTAGATTCTGCTTCTGACAAGGATGACGATGAAGAGAAAAAGTGGCGGAGGTGGGTTGACAATCACTTGGTTCAT
GTCTTGTCTCCAAACATATATCGAAATACTTCTGAGGCTCTTGAATCTTTTGACTATATCACAAGCAATGGTAATTTTAGCTTTACAGAAAGAATCACAG
TCAAGTATGCCGGAGCTGCTGCAATGTATTTTGTGTCCAAGAATTTGAAGAAGAAATATAACATTACTGATGAACGTGCTGCCCTGTATGAAGCTGTGGA
AACGTGGGTGGATGCTCTAAATGGCCGAGAGTTTCTTGGGGGGTCAAAGCCTAACTTAGCTGACCTTGCTGTCTTTGGGGTATTGAGACCCATCCGCTAT
TTGAGGTCTGGTAGAGATATGGTGGAGCAAACTCGAATAGGGGATTGGTACACAAGAATGGAGAATGCTGTGGGGGAGTCCTCAAGGATGAAGGCATAG
AA sequence
>Potri.015G038300.1 pacid=42775151 polypeptide=Potri.015G038300.1.p locus=Potri.015G038300 ID=Potri.015G038300.1.v4.1 annot-version=v4.1
MRRASTLASSVLSRTLSSTLHDCSGLSTTSAATINHRFLHAALFSTTTSTGSSSTRRIFNPFSTYLGVAGALVSAAAAASLSQEVLAKEPPPAELVPKEV
VLYQYEACPFCNKVKAYLDYYDIPYKVVEVNPISKKEIKWSDYKKVPILLVDGEQLVDSSAIIDKLGNKIHGKEIVDSASDKDDDEEKKWRRWVDNHLVH
VLSPNIYRNTSEALESFDYITSNGNFSFTERITVKYAGAAAMYFVSKNLKKKYNITDERAALYEAVETWVDALNGREFLGGSKPNLADLAVFGVLRPIRY
LRSGRDMVEQTRIGDWYTRMENAVGESSRMKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42150 Glutathione S-transferase fami... Potri.015G038300
[exp]
0 1
AT1G14060 GCK domain-containing protein ... Potri.019G081400
[exp]
1.00 0.8927
AT4G28510 ATPHB1 prohibitin 1 (.1) Potri.007G134700
[exp]
4.89 0.8842 PHB1.1
AT2G40290 Eukaryotic translation initiat... Potri.008G072500
[exp]
8.94 0.8881 ALPHA.7
AT3G18190 TCP-1/cpn60 chaperonin family ... Potri.015G042600
[exp]
9.05 0.8127
AT4G11630 Ribosomal protein L19 family p... Potri.012G086800
[exp]
10.39 0.8812
AT4G02930 GTP binding Elongation factor ... Potri.014G138100
[exp]
12.00 0.8685 TUFA.4
AT3G02530 TCP-1/cpn60 chaperonin family ... Potri.004G101500
[exp]
13.41 0.8518
AT1G18850 unknown protein Potri.015G064300
[exp]
14.69 0.8719
AT3G22320 RPB5A, NRPD5, N... RNA POLYMERASE II FIFTH LARGES... Potri.006G161600
[exp]
17.54 0.7949 Pt-ATRPABC24.1
AT5G40770 ATPHB3 prohibitin 3 (.1) Potri.017G065800
[exp]
20.49 0.8523 PHB3.1

Potri.015G038300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.