Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) AT1G21150 185 / 1e-54 Mitochondrial transcription termination factor family protein (.1) AT1G61980 125 / 6e-32 Mitochondrial transcription termination factor family protein (.1) AT1G61970 123 / 2e-31 Mitochondrial transcription termination factor family protein (.1.2) AT3G46950 115 / 2e-28 Mitochondrial transcription termination factor family protein (.1) AT1G62110 115 / 2e-28 Mitochondrial transcription termination factor family protein (.1) AT1G61990 113 / 1e-27 Mitochondrial transcription termination factor family protein (.1) AT1G62085 111 / 1e-26 Mitochondrial transcription termination factor family protein (.1) AT1G61960 110 / 1e-26 Mitochondrial transcription termination factor family protein (.1) AT5G64950 109 / 1e-26 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038400 [exp] 622 / 0 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.012G046700 [exp] 405 / 2e-140 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.012G046800 [exp] 387 / 1e-133 AT5G07900 228 / 4e-71 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 270 / 9e-88 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 261 / 4e-84 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 251 / 3e-80 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 251 / 7e-80 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 250 / 8e-80 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 242 / 1e-76 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004957 [exp] 233 / 5e-73 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 219 / 6e-68 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 216 / 6e-67 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 213 / 3e-65 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 199 / 9e-60 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 171 / 1e-49 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 150 / 2e-41 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 147 / 2e-40 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 142 / 2e-39 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 139 / 2e-38 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.015G038500.3 pacid=42775932 polypeptide=Potri.015G038500.3.p locus=Potri.015G038500 ID=Potri.015G038500.3.v4.1 annot-version=v4.1 ATGTTTTATTTCCTCTACAAATCCCTTCTCCAACATGGGAGACACGCTGCCACACTTTCACCCAGCCACAAGCTCTTTTCATTTCAACACTCACCTTCGA TTATTACTCTTAGATTCTTCATCTCAACCCTCGAAAGCCCAAATAAACAGTCATTTGCAGCCTCTTATCTCATAAACAAATTTGTGTTCTCTCCTGAATC TGCTCTTTCAGCTTCTAAACATCTCAGTTTTAAAACCCCAGATAACCCTGACTCAGTGATTCGCATGTTCCAGCACTATGGTCTCTCTCAAGATCAAATC TTTAAACTCGTTAAAAAATACCCACGAGTGCTTTCGTGCAAACCTGAGAAAACCCTTTTGCCGAAACTCAAGTTTTTTCACTCTAAAGGCATGTCAGGCA ATGACATTGCCCACATTTTATGTGCACATCCTTGTATTTTGAATCGAAGCTTGGAAAACCAAATAATTCTTAATTTCAACTTCCTTGGCAATTTGCTTCA ATCTAATGAAAAGACAATTGCTGCTGTTAAAAGATACTCGCCTATTCTCTATCATAAAATCGATACATATTTGAAACCTTGTATCGACATTTTGGAAGAG TATGGAGTCCCCAAAAGGCATATTGCTACATTGGTTCACCGTTCTCCTAGGTCTGTCATGATGTCTCCGAATCATTTGAGAAGCATCGCTGAGACGGTGA GAGAAATGGGATGTGATCCTCTTAAGCCGCATTTTGCTACGGCAGTGATGGTGATGGGTCTATTGAGCAAATCTGGGTGGGAAAGGAGGCTGGGTGTTTA TAAGAGTTGGGGTTGGTCCGAGGAAGACGTTCTTGCTGCTTTCATAAAGGAGCCTTGGTGCATGATGACATCGGATGATAAGATTATGGCAGTGATGGAT TTTTTGGTTAATAACATGGATTGTGAGCCTTCATTTATTGTGAAAAACCCCTATCTTTTGAAGCCAGGCTTGAAGACAACATTTATACCAAGAGCTTCAG TTGCTCAGTTTTTGTTATCGAAACAGTTGATTAAAAGGAAGCCTAACTTGGTTACTCTGTTTTTGTGTTCTGAGAAGTTGTTCCTTGAGAAGTTCGTGAA TTGTTTTGATGAAGCCCCACAGCTATTGAAGCTGTATAACAAAAGAAATCAAATCTTTCAAAAATGA
AA sequence Show only first row Show all	>Potri.015G038500.3 pacid=42775932 polypeptide=Potri.015G038500.3.p locus=Potri.015G038500 ID=Potri.015G038500.3.v4.1 annot-version=v4.1 MFYFLYKSLLQHGRHAATLSPSHKLFSFQHSPSIITLRFFISTLESPNKQSFAASYLINKFVFSPESALSASKHLSFKTPDNPDSVIRMFQHYGLSQDQI FKLVKKYPRVLSCKPEKTLLPKLKFFHSKGMSGNDIAHILCAHPCILNRSLENQIILNFNFLGNLLQSNEKTIAAVKRYSPILYHKIDTYLKPCIDILEE YGVPKRHIATLVHRSPRSVMMSPNHLRSIAETVREMGCDPLKPHFATAVMVMGLLSKSGWERRLGVYKSWGWSEEDVLAAFIKEPWCMMTSDDKIMAVMD FLVNNMDCEPSFIVKNPYLLKPGLKTTFIPRASVAQFLLSKQLIKRKPNLVTLFLCSEKLFLEKFVNCFDEAPQLLKLYNKRNQIFQK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	0	1
AT4G05440		EDA35	embryo sac development arrest ...		Potri.017G048600 [exp]	1.00	0.9269
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G133000 [exp]	1.41	0.9234
AT3G04130			Tetratricopeptide repeat (TPR)...		Potri.008G179201 [exp]	5.47	0.8403
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	5.47	0.9040
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	5.91	0.8792
AT3G06920			Tetratricopeptide repeat (TPR)...		Potri.010G014100 [exp]	6.00	0.8579
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	6.32	0.8838
AT2G44850			unknown protein		Potri.002G137300 [exp]	8.77	0.8603
AT4G29540		AtLpxA	bacterial transferase hexapept...		Potri.006G150200 [exp]	9.16	0.8216
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	10.39	0.8693

Compare expression of checked genes

Potri.015G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.