Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AMI3,TOC64.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17970 747 / 0 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 554 / 0 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G08980 374 / 2e-124 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT1G56440 97 / 4e-21 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 87 / 9e-18 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 81 / 3e-16 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G08320 78 / 3e-15 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62740 77 / 1e-14 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G12400 76 / 4e-14 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 75 / 6e-14 Hop1 Hop1, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046900 [exp] 981 / 0 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 561 / 0 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.013G024200 [exp] 428 / 1e-145 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G024100 [exp] 406 / 7e-137 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.005G014100 [exp] 97 / 3e-21 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G008400 [exp] 94 / 3e-20 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G070300 [exp] 83 / 2e-16 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 81 / 9e-16 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.014G141800 [exp] 80 / 2e-15 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042001 [exp] 797 / 0 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 787 / 0 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 747 / 0 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 729 / 0 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10029941 [exp] 398 / 1e-133 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10004466 [exp] 392 / 2e-131 AT1G08980 549 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10031418 [exp] 96 / 1e-20 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 84 / 6e-17 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 84 / 6e-17 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041189 [exp] 79 / 7e-16 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.015G038600.3 pacid=42776549 polypeptide=Potri.015G038600.3.p locus=Potri.015G038600 ID=Potri.015G038600.3.v4.1 annot-version=v4.1 ATGGCGTCGAATCCTGCAAATCTATGGGTGTTGTTAGGACTAGGACTAGCTGGTATTTTTTTATTCACTAAAAAGTTTAAGAAAGTTCTCAGAGAAGATT TTGGCGCTTTTATCCACAAGCTTCAGTTGCTTCCTCCGCCGCAGCCTGCTCCTCCTAAAGCTCCTCATCCTCTCACCGGCCTCACCTTCGCCGTCTCCGA CTTATTTGATATTGAAGGATATGTGACTGGATTTGGTCATCCAGACTGGGCAAAGACACACGAGGCGGCTTCTCGAACATCTGTTGTCGTTTCGACTCTT GTTGAAGGAGGTGCTACTTGTGTCGGTAAAACTGTTATTGATGAGCTTGCTTATAGTATCACTGGAGAAAACAAGCATTATGGTACACCTACCAATCCTG TTGAGCCTGCACGAGTACCAGGTGGATCCAGTAGTGGCGCTGCTGTGGCTGTAGCTGCTAATCTGGTTGACTTCTCTTTGGGTGTTGATACTGTTGGTGG TGTGAGAGTACCTGCTGGATTTTGTGGTATCATAGGATTTCGACCCTCATATGGAGCTATTTCAAAGATAGGAGTTTTACCTGTTTCAGTCAGTCTTGAC ACTGTTGGTTGGTTTGCTAAGGATCCTAATATTCTGCGACGTGTTGGACATGTTCTTCTTCAATCTGCTTTTGGAGGTCAACGTAGTCCTAGGCAAATTA TAATGGCAGATGATTGTTTTCAATTACTAAAGATTCCTGTTGATAGAATTGCCCAGGTGGTGGTTAAGTCAACTGAAAAGCATTTCGGAAGACAATTATT GAAGCATGAAATTCTTGATGTGTATCTGAATTCTAAAGTTCCAAGCCTGAAAGAGTTCCACAACAAAAAAACAAATGGTGAAGTTAAAACTTCTTCAATA AGATTGCTTGCGAATGTCATGCAGCTTCTTCATAGATATGAGTTCAGAAGCAATCACGAGGAATGGATTAACACAGTAAAGCCAATTCTTGAGCCCAATT TGTCAGCTCAGATGAATGAAATAATGGAGCTGTCAGATGCAGAGATTGAACTCTGCAAGTCTATTAGAGAAGAAATGCGTTCGGCTATCAACTCTCTATT GAAGGAGCACTTGGAAAAGAAAACACATTGCACTTCCATTTTAATTTGTGATGATGGGATTCTGGTGGTCCCTACAACTGCTTATCTTCCTCCAAAACTT GGCGGGAAGGAGATTTTATCAGAAGAATATCAGAGCTCTTCATTTGGTCTTTTGAGTATTGCTAGCCTATCAGGTTGCTGTCAGGTCACTGTACCATTAG GATATTATAACAAGTGTCCTGTCTCTGTGTCCTTGATAGCCAGACATGGCAGTGATCGCTTTTTACTAGATACAGTGCAGACCATGTATAAAACTTTACA AGAACAAGCTGAGACATATGTGAATTCCAAATCGAGTAACAAAGACAGTCGGGAAAATTCTGCTGAGATGGCTAAAGAAAAGGGCAATCAAGCATTTAAG GAGCAGCAGTGGCAGAAGGCTATTAGCTATTATAATGAAGCTATCAAACTTAATGACAAGAATGCAACATATTACAGTAACAGAGCTGCAGCATATCTTG AACTGGGAAGTTTCCAACATGCTGAAGCAGATTGTTCCAATGCTATCAACCTTGATAAAAAGAATGTTAAGGCTTATTTGCGAAGAGGGACAGCAAGAGA GATGCTTGGTTACTATAAGGATGCAATTGAAGATTTCAAATATGCCCTGGTGCTTGAGCCAACTAATAAAAGAGCATCCCTTTCTGCTGAAAGATTGCAG AAAGTTTTTGCAGCAGGTTATTGA
AA sequence Show only first row Show all	>Potri.015G038600.3 pacid=42776549 polypeptide=Potri.015G038600.3.p locus=Potri.015G038600 ID=Potri.015G038600.3.v4.1 annot-version=v4.1 MASNPANLWVLLGLGLAGIFLFTKKFKKVLREDFGAFIHKLQLLPPPQPAPPKAPHPLTGLTFAVSDLFDIEGYVTGFGHPDWAKTHEAASRTSVVVSTL VEGGATCVGKTVIDELAYSITGENKHYGTPTNPVEPARVPGGSSSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGIIGFRPSYGAISKIGVLPVSVSLD TVGWFAKDPNILRRVGHVLLQSAFGGQRSPRQIIMADDCFQLLKIPVDRIAQVVVKSTEKHFGRQLLKHEILDVYLNSKVPSLKEFHNKKTNGEVKTSSI RLLANVMQLLHRYEFRSNHEEWINTVKPILEPNLSAQMNEIMELSDAEIELCKSIREEMRSAINSLLKEHLEKKTHCTSILICDDGILVVPTTAYLPPKL GGKEILSEEYQSSSFGLLSIASLSGCCQVTVPLGYYNKCPVSVSLIARHGSDRFLLDTVQTMYKTLQEQAETYVNSKSSNKDSRENSAEMAKEKGNQAFK EQQWQKAISYYNEAIKLNDKNATYYSNRAAAYLELGSFQHAEADCSNAINLDKKNVKAYLRRGTAREMLGYYKDAIEDFKYALVLEPTNKRASLSAERLQ KVFAAGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17970		ATTOC64-III	translocon at the outer membra...		Potri.015G038600 [exp]	0	1	AMI3,TOC64.2
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.003G056400 [exp]	1.73	0.8270
AT5G10070			RNase L inhibitor protein-rela...		Potri.005G080300 [exp]	3.60	0.8149
AT4G26190			Haloacid dehalogenase-like hyd...		Potri.004G116400 [exp]	12.92	0.7505
AT4G10070			KH domain-containing protein (...		Potri.019G072500 [exp]	18.54	0.8227
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	27.65	0.8169
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	31.11	0.8264
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Potri.008G193700 [exp]	31.46	0.7950
AT5G53920			ribosomal protein L11 methyltr...		Potri.011G116100 [exp]	31.81	0.7869
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	33.94	0.8150
AT1G64600			methyltransferases;copper ion ...		Potri.001G086800 [exp]	41.95	0.8047

Compare expression of checked genes

Potri.015G038600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.