Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48600 863 / 0 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 855 / 0 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73600 843 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G64970 74 / 3e-14 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT5G13710 74 / 3e-14 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 61 / 8e-10 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 54 / 1e-07 SMT3 sterol methyltransferase 3 (.1) AT4G33110 52 / 6e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 47 / 1e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 44 / 0.0002 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047400 [exp] 967 / 0 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G047301 [exp] 239 / 2e-77 AT1G48600 213 / 8e-68 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G263700 [exp] 82 / 5e-17 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 76 / 7e-15 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.013G077000 [exp] 70 / 8e-13 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.005G245800 [exp] 67 / 6e-12 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 64 / 5e-11 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.016G056000 [exp] 58 / 4e-09 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.018G060000 [exp] 50 / 3e-06 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042006 [exp] 871 / 0 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 867 / 0 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 866 / 0 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 806 / 0 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009537 [exp] 75 / 3e-14 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 74 / 3e-14 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10022684 [exp] 60 / 2e-09 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023995 [exp] 57 / 7e-09 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10005625 [exp] 58 / 9e-09 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10029124 [exp] 54 / 1e-07 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain CL0063 [poplar] [flax] NADP_Rossmann PF13489 [poplar] [flax] Methyltransf_23 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.015G039000.2 pacid=42774851 polypeptide=Potri.015G039000.2.p locus=Potri.015G039000 ID=Potri.015G039000.2.v4.1 annot-version=v4.1 ATGTCCTCCACCCACTCCGCCACTGAAGATCCCTTTTCAACTCCACCGCCGGCCAGTCGTGTGGAAGAACGCGATATTCAGAAGAAGTATTGGATGGATA ACATTTCCGATTTGAGTGTGAATGCAATGATGCTTGACTCGAAAGCATCTGAACTTGACAAGGAAGAAAGACCTGAGATACTTTCTCTGCTTCCACCTTA TGAAGGAAAAACAGTTTTGGAACTCGGAGCTGGTATTGGCCGTTTCACAGGGGAATTAGCACAGAAGGCTGGCCAAGTAGTGGCTTTGGACTTCATTGAG AGTGCAATAAAAAAGAATGAAAATATCAACGGACACTATAAGAATGTCAAGTTTATGTGCGCTGATGTGACATCCCCAGATCTGAATATTTCAGAGGGGT CGGTGGATTTGATATTCTCAAATTGGCTTCTCATGTATCTCTCTGACAAAGAGGTGGAGAATCTGGTAGAAAGGATGGTCAAATGGGTGAAGGTTGATGG GTTTATTTTCTTCAGAGAGTCTTGTTTTCATCAATCTGGAGATTCTAAGCGAAAATACAACCCAACCCATTACCGGGAACCCAGATTCTACACGAAGGTG TTTAAAGAATGCCATACGCGTGATGGGTCTGGAGATTCTTTCGAACTCTCTCTTGTTGGCTGCAAATGCATCTCAGCTTATGTGAAAAACAAAAAGAACC AGAATCAGATTTGTTGGATATGGCAGAAAGTTAGTTCATATGAGGATAAGGGGTTCCAGCGATTCTTAGATAATGTTCAGTATAAATCCAATGGCATATT ACGTTATGAGCGTGTCTTTGGACAAGGTTATGTGAGTACAGGAGGAATTGAAACAACTAAAGAATTTGTGGGAAAACTGGATCTTAAGCCTGGCCAGAAA GTCCTAGATGTTGGCTGTGGGATTGGGGGAGGTGACTTTTACATGGCTGAGAACTTTGATGTGGAGGTTGTAGGCATTGACCTCTCCATAAATATGATTT CGTTTGCCCTTGAACGTGCCATTGGGCTCAAATGTTCTGTGGAGTTTGAAGTTGCTGATTGTACTACAAAGACATATCCTGACAACACATTTGATGTTAT CTACAGCCGTGACACCATTTTGCACATTCAAGACAAACCTGCATTATTTAGATCTTTCTTCAAGTGGTTGAAGCCTGGAGGTAAAGTACTTATCAGTGAT TACTGCAAGTGTGATGGAACTCCATCACCAGAATTCGCCGAGTACATTAAACAGAGAGGATATGATCTTCATGATGTAAAAGCATATGGCCAGATGCTTA GGGATGCTGGTTTTGATGAGGTCGTTGCAGAGGACCGAACTGATCAGTTCAACAAAGTTCTGCAAAGGGAGTTAAATGCTATAGAGAAGGACAAGGATGA GTTCATCCACGACTTTTCCGAAGGGGACTATAATGATATAGTTGGTGGATGGAAGGCAAAGCTGATCAGGAGTTCATCTGGGGAGCAGCGATGGGGCCTG TTCATCGCCAAGAAAAAATGA
AA sequence Show only first row Show all	>Potri.015G039000.2 pacid=42774851 polypeptide=Potri.015G039000.2.p locus=Potri.015G039000 ID=Potri.015G039000.2.v4.1 annot-version=v4.1 MSSTHSATEDPFSTPPPASRVEERDIQKKYWMDNISDLSVNAMMLDSKASELDKEERPEILSLLPPYEGKTVLELGAGIGRFTGELAQKAGQVVALDFIE SAIKKNENINGHYKNVKFMCADVTSPDLNISEGSVDLIFSNWLLMYLSDKEVENLVERMVKWVKVDGFIFFRESCFHQSGDSKRKYNPTHYREPRFYTKV FKECHTRDGSGDSFELSLVGCKCISAYVKNKKNQNQICWIWQKVSSYEDKGFQRFLDNVQYKSNGILRYERVFGQGYVSTGGIETTKEFVGKLDLKPGQK VLDVGCGIGGGDFYMAENFDVEVVGIDLSINMISFALERAIGLKCSVEFEVADCTTKTYPDNTFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD YCKCDGTPSPEFAEYIKQRGYDLHDVKAYGQMLRDAGFDEVVAEDRTDQFNKVLQRELNAIEKDKDEFIHDFSEGDYNDIVGGWKAKLIRSSSGEQRWGL FIAKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.015G039000 [exp]	0	1
					Potri.017G142923 [exp]	2.44	0.9414
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.001G169100 [exp]	4.47	0.9274
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022002 [exp]	5.29	0.9300
AT1G14760		KNATM	KNOX Arabidopsis thaliana mein...		Potri.012G043400 [exp]	5.47	0.9172
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.015G005900 [exp]	6.00	0.9346
AT1G75640			Leucine-rich receptor-like pro...		Potri.005G235100 [exp]	6.24	0.8675
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	6.63	0.9398	Pt-ATML1.1
AT5G19875			unknown protein		Potri.001G009300 [exp]	7.21	0.8865
AT2G26490			Transducin/WD40 repeat-like su...		Potri.003G051100 [exp]	9.94	0.9167
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Potri.002G005800 [exp]	10.95	0.9210

Compare expression of checked genes

Potri.015G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.