Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18020 805 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 239 / 3e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 239 / 4e-69 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 225 / 6e-65 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62590 224 / 2e-64 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 219 / 3e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 221 / 1e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 219 / 2e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 220 / 2e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 213 / 2e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 253 / 2e-72 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 244 / 4e-70 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G025600 [exp] 238 / 5e-69 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 234 / 1e-67 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 234 / 5e-67 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 230 / 6e-66 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 225 / 4e-64 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 221 / 2e-63 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 221 / 4e-63 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024513 [exp] 901 / 0 AT3G18020 777 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 240 / 4e-69 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014247 [exp] 229 / 3e-66 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 229 / 1e-64 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 226 / 6e-64 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010410 [exp] 223 / 3e-62 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 223 / 3e-62 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025533 [exp] 220 / 2e-61 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 216 / 2e-61 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10017684 [exp] 218 / 3e-61 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.015G039300.1 pacid=42775336 polypeptide=Potri.015G039300.1.p locus=Potri.015G039300 ID=Potri.015G039300.1.v4.1 annot-version=v4.1 ATGTTCCTCGCCAATCTCTCAAAACTCAAGAAGCTCTCAATACCTTTCAAACCCAAACTCTCACCTCTCTCATTCCTCTCTACACACCCACAAAACCAAG AACAAGCACTGAACCACCAACAACAAAGCATTTGCATAACCAACAGGTCATACTGGACCCAAAAAATCCATGACCTCTGCACCAAACACCGCAACGTTGA TGAAGCCCTCCGCCTTCTTGACCATCTCCGCCTCCGTGGATACCTCCCTGACTCCCTCAATCTCAGCAGCATAATTCACGGCCTCTGTGATGCCAACCGC TTCAATGAAGCCCACCAACGCCTTATCATCTTTTTAACCTCCCTTTGTGTCCCTGATGAGCGTACTTGTAATGTACTCGTTGCTCGCTTGCTTCATTCTA AAGACCCATTTAGGACATTGAATGTTATTCATCGTTTGATTGAATTTAAACCTGAGTTTGTGCCTTCGTTGATTAATTATAACCGTTTGATCGATCAGTT TTGCTCGGTCTCGCTGCCGAATGTAGCGCATAGGATGTTGTACGACATGATTAACAGAGGGCACTGTCCAAGTATTGTAAGTTATACTACCTTGGTTAAT GGGTATAGTAAGATTGGTGAAATCTCTGATGCTTATAAGCTGTTCGATGAAATGCCTGAATGGGGGGTCGTGCCTAATTCGCTGTCTTATAGTTTGTTGA TTCGTGGAGTTTTAAGAAAGAGAGACATTGAACGTGGAAGAGAATTGATGCACGTGCTCTTTCAGAGAATGAGACATGAAGAGGATCAGTCAGTGAATAG TGCCGCTTTTGATAATCTTGTTGATTGTTTGTGTAGAGAAGGGCTTTTTAATGAGGTTTTTATGATTGCCGAGGAAATGCCACAAGGAAATAGGGTGAAT GAGGACTTTGCTTATGGACATTTGATTGATTCCCTTTGTAAGGTTGGGAGGAGCCATGGTGCTTCCAGGGTCGTTTATATAATGAGGAAAAAAGGGTTTA CACCAAGTGTAGTGTCATATAATTCAATCATACATGGGCTTTGTAAGGAAGGGGGTTGCATGAGAGCTTATCAGTTGTTAGAGGAAGGGGTTGGATTTGG TTACTTGCTGTCTGAGTATACTTACAAGGTTCTGGTAGAAGCACTTTGTCAAGCAATGGATCTTGACAAGGCAAGGGAAGTTTTAAAAGTTATGTTGAAC AAGGGAGGGATGGATAGAACTAGGATTTACAATATATATTTAAGAGCTCTTTGTCTCATGAATAACCCAACTGAGCTTTTGAATGTGCTTGTTTCTATGC TACAAACTAATTGTCAGCCTGATGTGATCACTCTCAACACAGTTATTAATGGGTTTTGCAAGATGGGAAGGGTTGAAGAAGCTTTGAAGGTGCTAAATGA TATGATGACGGGGAAATTTTCTGCCCCTGATGCTGTGACCTTCACTTCCATCATAAGCGGTTTATTAAATGTTGGAAGAAGTCAAGAAGCTCGCAATTTA CTGCTTCAAATGCTTGAAAAGGGTATCACTCCTGGTGTTGTGACATACAATGCAATTCTTCGTGGTTTGTTTAAACTTCAGTTAACAAAAGAGGCAATGG CGGTTTTTGATGAAATGATAACTGACGGTGTAGCTGCCAACAGTCAAACTTACAGTATAATAGTCGAGGGATTATGCGAGTCTGGCCAAATAGATGGGGC TAAGAAGTTCTGGGATGAGGTTATTTGGCCGTCAAAAATCCATGATGATTTTGTTTATGCAGCCATTCTCAAAGGACTTTGCCGCTCAGGCCATTTGAAT GAGGCCATACATTTCCTTTATGAATTGGTAGATTCTGGGGTCAATCCTAATATTGTAAGCTATAACATTGTGATTGACAGAGCTTGCAGCTTAGGTATGA AAAGAGAAGCTTACCAAATAGCAGGAGAAATGCAAAAGAATGGGTTGACCCCTGATGCGGTAACGTGGCGGACTCTTGATAAATTACATGGACAAGTGAA GAATTGA
AA sequence Show only first row Show all	>Potri.015G039300.1 pacid=42775336 polypeptide=Potri.015G039300.1.p locus=Potri.015G039300 ID=Potri.015G039300.1.v4.1 annot-version=v4.1 MFLANLSKLKKLSIPFKPKLSPLSFLSTHPQNQEQALNHQQQSICITNRSYWTQKIHDLCTKHRNVDEALRLLDHLRLRGYLPDSLNLSSIIHGLCDANR FNEAHQRLIIFLTSLCVPDERTCNVLVARLLHSKDPFRTLNVIHRLIEFKPEFVPSLINYNRLIDQFCSVSLPNVAHRMLYDMINRGHCPSIVSYTTLVN GYSKIGEISDAYKLFDEMPEWGVVPNSLSYSLLIRGVLRKRDIERGRELMHVLFQRMRHEEDQSVNSAAFDNLVDCLCREGLFNEVFMIAEEMPQGNRVN EDFAYGHLIDSLCKVGRSHGASRVVYIMRKKGFTPSVVSYNSIIHGLCKEGGCMRAYQLLEEGVGFGYLLSEYTYKVLVEALCQAMDLDKAREVLKVMLN KGGMDRTRIYNIYLRALCLMNNPTELLNVLVSMLQTNCQPDVITLNTVINGFCKMGRVEEALKVLNDMMTGKFSAPDAVTFTSIISGLLNVGRSQEARNL LLQMLEKGITPGVVTYNAILRGLFKLQLTKEAMAVFDEMITDGVAANSQTYSIIVEGLCESGQIDGAKKFWDEVIWPSKIHDDFVYAAILKGLCRSGHLN EAIHFLYELVDSGVNPNIVSYNIVIDRACSLGMKREAYQIAGEMQKNGLTPDAVTWRTLDKLHGQVKN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	0	1
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	1.00	0.9524
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	1.41	0.9458
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	3.46	0.9429
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	4.24	0.9302
AT5G19151			unknown protein		Potri.008G203800 [exp]	4.79	0.9175
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	5.29	0.9330
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	5.47	0.9341
					Potri.001G354300 [exp]	6.32	0.8979
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.004G227800 [exp]	7.14	0.9220
AT1G77170			Tetratricopeptide repeat (TPR)...		Potri.006G164100 [exp]	7.54	0.9206

Compare expression of checked genes

Potri.015G039300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.