Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CBL1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18210 188 / 2e-61 Calcium-binding EF-hand family protein (.1.2) AT1G73630 180 / 2e-58 EF hand calcium-binding protein family (.1) AT5G37770 131 / 2e-39 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G66400 129 / 3e-38 CML23 calmodulin like 23 (.1) AT1G24620 128 / 1e-37 EF hand calcium-binding protein family (.1) AT2G15680 119 / 3e-34 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT1G05990 117 / 1e-33 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT5G17470 116 / 2e-33 EF hand calcium-binding protein family (.1) AT2G41110 110 / 2e-31 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 110 / 2e-31 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048200 [exp] 237 / 4e-81 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G126200 [exp] 142 / 2e-43 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.004G089400 [exp] 138 / 5e-42 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.010G107100 [exp] 130 / 1e-38 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 127 / 2e-37 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.002G239100 [exp] 117 / 8e-34 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.009G102500 [exp] 116 / 3e-33 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.015G032600 [exp] 113 / 2e-32 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 113 / 2e-32 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018012 [exp] 199 / 1e-65 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 189 / 1e-61 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 188 / 1e-61 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 136 / 1e-39 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10042008 [exp] 132 / 1e-39 AT1G18210 138 / 1e-42 Calcium-binding EF-hand family protein (.1.2) Lus10027081 [exp] 130 / 7e-39 AT1G18210 131 / 2e-39 Calcium-binding EF-hand family protein (.1.2) Lus10014050 [exp] 127 / 2e-37 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10004330 [exp] 125 / 4e-37 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 124 / 1e-36 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10019863 [exp] 123 / 9e-36 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.015G039500.1 pacid=42775842 polypeptide=Potri.015G039500.1.p locus=Potri.015G039500 ID=Potri.015G039500.1.v4.1 annot-version=v4.1 ATGGCAACCCCAATCTCGAACCCTAGCCCCGAAACCACCGCGCCGGCATCTTCCACTACCATCAACCTCGACGATACGGCGGAGCTCAGGAAGGTCTTCA ACCAATTCGACACAAACGGTGACGGCAAGATCTCAGCTTCGGAGCTCGGAGAAGTGCTGAAATCCATGGGCTCTACCTACACCATGGAGGAGCTTCATCG CGTGATGGAAGATGTGGACACCGACAAGGACGGGTACATTGATTTGGCCGAGTTTGCAAAGCTGTGTCGATCCTCCTCCGCCGCTGCCGCCGCCTCTGAG CTGAGGGATGCGTTTGATCTGTACGATCAGAACGGTGACGGGATGATCTCGGCGGCGGAGCTCCACCAGGTGCTGAACCGGTTGGGGATGAAGTGTAAGG TGGACGAGTGCTTTCAGATGATTAAGAATGTCGATTCGGATGGTGATGGGTGTGTTAACTTTGAAGAGTTTCAGAAGATGATGGCTGCTAACATCAATAA TGGCTCCGCTGTCGTGGCTCCCTAG
AA sequence Show only first row Show all	>Potri.015G039500.1 pacid=42775842 polypeptide=Potri.015G039500.1.p locus=Potri.015G039500 ID=Potri.015G039500.1.v4.1 annot-version=v4.1 MATPISNPSPETTAPASSTTINLDDTAELRKVFNQFDTNGDGKISASELGEVLKSMGSTYTMEELHRVMEDVDTDKDGYIDLAEFAKLCRSSSAAAAASE LRDAFDLYDQNGDGMISAAELHQVLNRLGMKCKVDECFQMIKNVDSDGDGCVNFEEFQKMMAANINNGSAVVAP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18210			Calcium-binding EF-hand family...		Potri.015G039500 [exp]	0	1	Pt-CBL1.2
AT5G18800			Cox19-like CHCH family protein...		Potri.008G196600 [exp]	9.84	0.8455
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Potri.002G231800 [exp]	11.61	0.8112
AT1G14450			NADH dehydrogenase (ubiquinone...		Potri.004G229900 [exp]	18.00	0.8256
AT1G51650			ATP synthase epsilon chain, mi...		Potri.010G250000 [exp]	24.91	0.8311
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.016G139600 [exp]	26.98	0.8117	PAA1.4
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.018G132100 [exp]	31.17	0.7757
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Potri.005G076900 [exp]	31.22	0.8039
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.008G052100 [exp]	31.62	0.7888
AT5G47570			unknown protein		Potri.001G122200 [exp]	34.11	0.8097
AT2G02050			NADH-ubiquinone oxidoreductase...		Potri.008G141900 [exp]	39.39	0.8013

Compare expression of checked genes

Potri.015G039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.