Plant FIBer expression Database

Potri.015G039800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18190 509 / 8e-173 GC2 golgin candidate 2 (.1)
AT2G19950 75 / 1e-13 GC1 golgin candidate 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G086600
[exp]
72 / 8e-13 AT2G19950 626 / 0.0 golgin candidate 1 (.1.2)
Potri.006G164350
[exp]
46 / 4e-05 AT2G19950 327 / 3e-108 golgin candidate 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009060
[exp]
581 / 0 AT1G18190 499 / 5e-169 golgin candidate 2 (.1)
Lus10031344
[exp]
371 / 2e-119 AT1G18190 301 / 5e-93 golgin candidate 2 (.1)
Lus10012966
[exp]
72 / 1e-12 AT2G19950 716 / 0.0 golgin candidate 1 (.1.2)
Lus10034941
[exp]
63 / 6e-10 AT2G19950 685 / 0.0 golgin candidate 1 (.1.2)
PFAM info
Representative CDS sequence
>Potri.015G039800.1 pacid=42776285 polypeptide=Potri.015G039800.1.p locus=Potri.015G039800 ID=Potri.015G039800.1.v4.1 annot-version=v4.1
ATGGCGAATTGGATCTCTTCAAAACTCAAAGTCGCCGAAACCTTCTTTGAACAGATCGATCAGCAAGCAGCAGAATCTTTGAAGAAGAACGAACAGCCAC
GATCTGACGATGATCAGAAATTTGATCTCCCAGCGAAAGCCGGGGGTTCTCTGTCTTTAAAGGATCAATTAAAGAAGAAAACACATGAATTTAACAATGA
ATACAACGGAAAATTGAATGCTGATTTTGCTATCAATAAGAATAAGAATAATGTTGTTAATAACAATGTTTTTGGTAGTGTCAATGATAAGGAGGTTTTG
AATGCTCCGAAAATTTCTCCCAAACCTAGGGCAACGCTTACTGATAGTGACTGGACTGAGCTACTTGGTACTCCTCCGAGTCCGAATGCAAGTTCGCCTA
ATCGGAGTAATGGGGCACCTGCCATTCGTGGGTTGAGAAAGGAGGGTAGGAGGCAAGGGAGTTTGGTTTCAAATTCGTCGGTGGTCGAGGCGAAAAGGAA
TCAGAAAGTTAGGGGTAATAGTGATAAGAATAACAGTGGGGTGACATCAAAGAGGTTGGATTTAAAGTTGAATGGGAAACCAAGTGATGGAGAGGAGTCT
GGCTCATCAGCTAGGTCTTCAAGTGTTGAGTTGCCAAGTGATGGTAAGGTTATGGATGGGACAGGACTGGAGCAAAATAAGAATGTGGGTGGTGAGGTAG
TTGGAGAAAGGAAGGATGAGGGGAGTGAAGAAAATGGCGGGCGTGTTGAAAACAAGGATGCTGTGGAAGGGAAGGTTTTGCATGTGGCAAATAAGAATCA
TGCTTTGCTTTCTGCACCGGATAAAATAGATGGGATATCTGATGTGAAGAAGGGAGTTGGTGATGTTTATGGTCGCTTGAAAAGTACTGTGAAAGGGAAG
CAGGGAACTCGGGCTGCATCTAGAAGCTCTGTCTCGGATGATTTGAAGAAAAATGATTCGACTAGCGATGAGAGCTCTGATTCAGATAGTGATTCGGGTT
CATCATCTGATTCTGAGAGTGAACAGGAGAGGGAGAGAAGGAAGAAGATTTTGGCTGGAAGAGCAGCAGCTAAAGCTGTGCAGGCCATCATAGAGCGGGA
GAATATGGTTGCCAGATTGGAAGGGGAGAAGCAGAGCTTGGAGAAAATACTTGAAGAACGAGCAAAACAACAAGTACAAGAGGCTTCAGAGCTTCAGACA
ACTACGATGGAAACAATGGAAGCTGTTGACTTAGAAAAGCAGAAACATAATAATACTAGAATGGAAGTTCTTTCCCGATTGGCTAAACTTGAGACCACAA
ATGCTGATCTTGCAAGATCCCTTGCTACTGCACAGAAGAATCTTGAACTAGAGATTAATCAGGTGGCAGAACTCCGACAACAATTTGAATTAAAAGAAGT
GGCTCTTGAAGATCTCAGGAGGAGGATCTCCAAGACTCACCAGACTGAAACATATCTAAACCAGGCTGCAGCTTCAAAAGGAGTTCAATTTGAACGAGAG
ATTCTTGAGACAGAGTACTTGTTCCTAATTGATAAAATTCAAAGATTGGAAGACAAGGCAAAGAAGCTAGAAACAGATATTGAGATGACAAGAAAGGAGA
TGGAGGATCCGACAGAAGTAGAAATTGAGCTCAAGAGAAGGCTTGGTCAGTTAACTGACCATTTGATTCAGAAACAAGCCCAGGTTGAAGCGCTCTCCTC
GGAGAAGGCAACCATAGCTTTCAGAATTGAGGCTGTTTCAAGGTTGCTAGAGGAAAATAAGTCGGTGGTGAATTCAAGTAATTTGGAATCAGGAAAATGG
GCAATTTCTGACTCAAAGTTGAGGCCTATGTTTGAGGACAAAATCCGTGCTGGAAGGAAACACTTGGGATCATTGGTTCAGCAGTTAGACGCTATTTTCC
TTGCAGGTGTAGTGTTTCTAAGGAGAAATCCAACAGCAAAATTGTGGTGTCTGGTCTATCTTTTATGCCTTCACGTTTGGGTCATTTACATTCTTATGGC
ACCCTCCCAATCATCAAATGAGGGCAGATCTGGTGCTGTTTTTTCGCTGGAAAATCTCAACAAAACTGCAGGTGTGTAA
AA sequence
>Potri.015G039800.1 pacid=42776285 polypeptide=Potri.015G039800.1.p locus=Potri.015G039800 ID=Potri.015G039800.1.v4.1 annot-version=v4.1
MANWISSKLKVAETFFEQIDQQAAESLKKNEQPRSDDDQKFDLPAKAGGSLSLKDQLKKKTHEFNNEYNGKLNADFAINKNKNNVVNNNVFGSVNDKEVL
NAPKISPKPRATLTDSDWTELLGTPPSPNASSPNRSNGAPAIRGLRKEGRRQGSLVSNSSVVEAKRNQKVRGNSDKNNSGVTSKRLDLKLNGKPSDGEES
GSSARSSSVELPSDGKVMDGTGLEQNKNVGGEVVGERKDEGSEENGGRVENKDAVEGKVLHVANKNHALLSAPDKIDGISDVKKGVGDVYGRLKSTVKGK
QGTRAASRSSVSDDLKKNDSTSDESSDSDSDSGSSSDSESEQERERRKKILAGRAAAKAVQAIIERENMVARLEGEKQSLEKILEERAKQQVQEASELQT
TTMETMEAVDLEKQKHNNTRMEVLSRLAKLETTNADLARSLATAQKNLELEINQVAELRQQFELKEVALEDLRRRISKTHQTETYLNQAAASKGVQFERE
ILETEYLFLIDKIQRLEDKAKKLETDIEMTRKEMEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATIAFRIEAVSRLLEENKSVVNSSNLESGKW
AISDSKLRPMFEDKIRAGRKHLGSLVQQLDAIFLAGVVFLRRNPTAKLWCLVYLLCLHVWVIYILMAPSQSSNEGRSGAVFSLENLNKTAGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G18190 GC2 golgin candidate 2 (.1) Potri.015G039800
[exp]
0 1
AT4G30600 signal recognition particle re... Potri.006G183600
[exp]
1.41 0.9266
AT5G42360 Galactose oxidase/kelch repeat... Potri.005G253500
[exp]
1.41 0.8765
AT4G35890 winged-helix DNA-binding trans... Potri.005G109400
[exp]
9.94 0.8108
AT3G14172 unknown protein Potri.001G164900
[exp]
9.94 0.8433
AT1G55535 unknown protein Potri.001G001400
[exp]
10.00 0.7966
AT5G20600 unknown protein Potri.012G036500
[exp]
10.24 0.8543
AT1G75590 SAUR-like auxin-responsive pro... Potri.002G024500
[exp]
10.67 0.8585
AT5G17910 unknown protein Potri.013G068800
[exp]
11.61 0.8503
AT5G13090 unknown protein Potri.001G059400
[exp]
11.83 0.8351
AT2G27740 Family of unknown function (DU... Potri.009G147500
[exp]
12.00 0.8532

Potri.015G039800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.