Plant FIBer expression Database

Potri.015G039900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18180 404 / 8e-143 Protein of unknown function (DUF1295) (.1)
AT1G73650 401 / 2e-141 Protein of unknown function (DUF1295) (.1), Protein of unknown function (DUF1295) (.2), Protein of unknown function (DUF1295) (.3), Protein of unknown function (DUF1295) (.4)
AT2G46890 64 / 2e-11 Protein of unknown function (DUF1295) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G109200
[exp]
65 / 1e-11 AT2G46890 456 / 1e-162 Protein of unknown function (DUF1295) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031343
[exp]
443 / 3e-158 AT1G73650 435 / 4e-155 Protein of unknown function (DUF1295) (.1), Protein of unknown function (DUF1295) (.2), Protein of unknown function (DUF1295) (.3), Protein of unknown function (DUF1295) (.4)
Lus10009061
[exp]
443 / 4e-158 AT1G18180 436 / 2e-155 Protein of unknown function (DUF1295) (.1)
Lus10009861
[exp]
64 / 2e-11 AT2G46890 456 / 2e-162 Protein of unknown function (DUF1295) (.1)
Lus10010291
[exp]
62 / 1e-10 AT2G46890 425 / 3e-150 Protein of unknown function (DUF1295) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0115 Steroid_dh PF06966 DUF1295 Protein of unknown function (DUF1295)
Representative CDS sequence
>Potri.015G039900.2 pacid=42775075 polypeptide=Potri.015G039900.2.p locus=Potri.015G039900 ID=Potri.015G039900.2.v4.1 annot-version=v4.1
ATGGGAACCGTTTTAGACTCCCATTTTCTAGCACTCACTGCCATCGTCACTGTGGGATACCAACTGCTGTTTTTTGTTATCACTGCCCTTCTGAAGTTTG
ATAAAGTCACTGACTTTGCCGGAAGCACAAATTTTATTATACTAGCTGTGTTGACTCTGGTTTTGAAAGGGACATGGCATTTCAGACAGGTAGTCTTGAG
TTTCCTAGTAGTATCTTGGGGTCTTCGCCTGGGACTGTTCCTGTTACTGAGGATTCTGCAGTGGGGGGAGGATAGACGTTTTGATGAAATGCGTAGTAAC
TTGGGGAAATTAGCTGTTTTCTGGATATTTCAGGCTGTCTGGGTGTGGACTGTGAGCTTACCTGTAACAGTGGTTAATGGAATTGACAGGGATCCTTCCG
TTCAGGCTGCAGACATAATTGGCTGGATTATGTGGTCTGTTGGTGTTTCAGTTGAAGCTACAGCTGATCAACAAAAACTGACATTCAAGAATGCTCCAGA
AAACAGAGGGAAATGGTGCAATGTTGGATTATGGAATATATCTCGTCACCCAAACTATTTTGGCGAGATTCTCCTTTGGTGGGGTATTTTTGTGGCTTCT
GCACCTGTACTGGAAGGTGCTGAGTGGCTGGTGATCCTTGGGCCAATCTTTCTCACATTGTTGCTTCTTTTTGTCAGTGGCATACCATTGCTTGAGCAAT
CTGCTGACAAGAAATTTGGCAACGTGGCTGCATACAGGACGTATAAAAGGACAACCAGCCCTCTAATTCCACTGCCCCAAGCAGTGTACAGGAGCTTACC
TTCATGGTTCAAATCTGTTTTCCTCTTTGAATTTCCTCTCTACAGTCGTAATTTTCCAGAAGAGGGGTCAGCATGGAATAGAACAAGACAAGGTGGAGGC
AGCGATGGATCGAAGATTGGCTAG
AA sequence
>Potri.015G039900.2 pacid=42775075 polypeptide=Potri.015G039900.2.p locus=Potri.015G039900 ID=Potri.015G039900.2.v4.1 annot-version=v4.1
MGTVLDSHFLALTAIVTVGYQLLFFVITALLKFDKVTDFAGSTNFIILAVLTLVLKGTWHFRQVVLSFLVVSWGLRLGLFLLLRILQWGEDRRFDEMRSN
LGKLAVFWIFQAVWVWTVSLPVTVVNGIDRDPSVQAADIIGWIMWSVGVSVEATADQQKLTFKNAPENRGKWCNVGLWNISRHPNYFGEILLWWGIFVAS
APVLEGAEWLVILGPIFLTLLLLFVSGIPLLEQSADKKFGNVAAYRTYKRTTSPLIPLPQAVYRSLPSWFKSVFLFEFPLYSRNFPEEGSAWNRTRQGGG
SDGSKIG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G18180 Protein of unknown function (D... Potri.015G039900
[exp]
0 1
AT2G17390 AKR2B ankyrin repeat-containing 2B (... Potri.004G210000
[exp]
2.44 0.9371 Pt-AKR2.1
AT5G38660 APE1 acclimation of photosynthesis ... Potri.004G102100
[exp]
2.82 0.9442
AT5G20380 PHT4;5 phosphate transporter 4;5 (.1) Potri.018G121600
[exp]
4.24 0.9058
AT1G30700 FAD-binding Berberine family p... Potri.001G470100
[exp]
4.89 0.9005
AT3G17609 bZIP HYH HY5-homolog (.1.2.3.4) Potri.010G004200
[exp]
5.09 0.9419 HY5.1
AT1G22750 unknown protein Potri.002G062600
[exp]
8.12 0.9028
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.019G011400
[exp]
8.83 0.9277
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Potri.004G152300
[exp]
12.24 0.9179
AT3G19660 unknown protein Potri.017G109900
[exp]
12.32 0.9210
Potri.005G182750
[exp]
12.48 0.9314

Potri.015G039900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.