Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73660 593 / 0 protein tyrosine kinase family protein (.1) AT1G18160 562 / 0 Protein kinase superfamily protein (.1) AT1G08720 460 / 6e-146 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G11850 453 / 7e-144 Protein kinase superfamily protein (.1) AT5G03730 386 / 4e-119 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT5G49470 358 / 7e-113 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 362 / 1e-110 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06640 353 / 6e-108 PAS domain-containing protein tyrosine kinase family protein (.1) AT4G24480 357 / 5e-107 Protein kinase superfamily protein (.1) AT4G23050 350 / 1e-106 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048400 [exp] 1630 / 0 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.013G034800 [exp] 461 / 7e-146 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 457 / 1e-144 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 449 / 1e-141 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 443 / 4e-139 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 382 / 2e-117 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G115800 [exp] 374 / 1e-114 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.002G111200 [exp] 377 / 2e-114 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.005G153100 [exp] 375 / 8e-114 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027247 [exp] 597 / 0 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10038955 [exp] 577 / 0 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 546 / 8e-180 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10009062 [exp] 516 / 3e-166 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10004124 [exp] 464 / 7e-148 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 463 / 7e-148 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10014368 [exp] 394 / 2e-121 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10023865 [exp] 391 / 8e-121 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10016912 [exp] 358 / 7e-110 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 358 / 8e-109 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.015G040100.2 pacid=42776499 polypeptide=Potri.015G040100.2.p locus=Potri.015G040100 ID=Potri.015G040100.2.v4.1 annot-version=v4.1 ATGAAGAACTTTCTCAAGAAGCTTCATATCATGCCTAATCAATCAGAGGATGCAGAGGGGTCAAATTCATCAAGAGGCCATAAGTCCACTAATGGATCAT CCCCTGATAATAAGTCTTTGCATTCTAGGTCCCAAGAGAATAAACCCTTTTCTGGCCTTTCAAATTGGTTAAGTTCAGTTGCTAATAGAAAAAGTCCTAG TCCACCATCATCTTCAAATGTGACTAGAGGAGAGAAGGTGGAGCAACCGGAGTCAATTAGTAGTAGTGGTTTTGATGTTGTTTCAGAAGCTGCAAGGCGT GATTCAGGGTCTACCACCTCCAGGGATCCTGATATTGAAGAGGAGTATCAGATACAGCTGGCTCTGGAGTTGAGTGCAAGTGAGGATCCCGAGGCAGTTC AGATTGAGGCTGTTAAGCAAATAAGCTTGGGCTCTTGTGCACCCGAGAATACTCCTGCTGAAGTCATTGCTTATCGATATTGGAATTACAATGCTCTTAG CTATGATGACAAGGTCTTGGATGGTTTTTATGACCTGTATGGAATCATGACCGAGTCCACAACAGACAGAATGCCTCCTCTCGTTGATTTGCAAGGAACA CCAGTCTCAGATGGTGTCACCTGGGAAGCAGTGCTGGTCAATAGGGCTGCTGATGCTAGTTTGTTGAAACTTGAACAGAAGGCACTGGAGATGACTGTCA AGTCAAGGTCAGAATGTCAAATTTTCATTGGCAGTGCTTTGGTGGGAAGGCTTGCTGTTTTAGTTTCTGATTACATGGGTGGATCAGTTGGGGATCCCAG CAATTTGTCAAGAGCATGGCGCAGTCTTAGCTATAGTTTGAAAGCAACCCTTGGTAGCATGGTTTTGCCACTTGGTTCTCTTACAATTGGCTTGCCTCGT CATCGTGCATTAATGTTCAAGGTTTTGGCTGATAGTGTTGGCATACCATGCCGGTTGGTAAAAGGGCATCTGTACACTGGTTCTGATGATGTAGCTATGA ACTTTGTAAAGCTCGATGATGGAAGGGAATACATTGTTGATCTAACAGCAGACCCTGGCACCCTTATTCCTTCTGATGCAGCTGGATCACATATAGAATA CGATGAGACATTCTTTTCTTCCAGTCCTTTATCTAGAGACATTGACTCTTCTCATATAGCTTCTTCTAGTAGTGGACACACAAGTTCATTTGAAGAACAT TCAGAACTTGGGACATTGGAAAAGCAATCCAGATTGAGAAATATTGCTGCTGTAGGGAACCAATCTGATGGAAGAAGTGAATCTCATGAGGGGGCAAGTT TAACTAGGCCGAGTAAAAGTGGAGAAGAATCTACGATGTCTTCAGATGATTTTGGAAAAACTTCCAATGCTGAGAAGGTGCCAGTGCGGGAGCTTCCTGG CAGACCTATTTACCCTTATGCACATGCTCGCTCTCCTTCTTGGACTGAAGGTGTTAGTTCTCCTGCTGCCCGTAGAATGAAAGTAAAAGATGTTTCACAA TATATGATTGATGCTGCAAAAGAGAATCCACAGTTAGCCCAGAAACTTCACGATGTGTTGCTTGAAAGTGGTGTTGTTGCCCCCCCTAACCTGTTTACTG AAATCTATGCTGAACAGTTGGATTTGTCTACTGCTGAGACCAAGTCCCCAACAGTAGATAAGGTTGATCACAAACAGAGGACTGAAATCCGAAGTGTGAA GGATCAAGATGATCTTGTTCCTGCTCGATTTTTGCCTCCTCTGCCTCCTCATAGGCTGCCATATAAAGCCAGTTCACCTGGTAATCCACCTGATCAATCT AAACCTGTGGAGGGTTCAGGGGTCAACCATCCTTTTGATACAAGGGAGATCACTGGACTACCCATACCATTGCAGTCTGAAGTTACTCCTGTGAAATATG TAAAAAAAGTTCCTGTAGCTGCTGCAGCTGCTGCCGCTGCAGCTGTTGTTGCATCTTCTATGGTTGTTGCTGCAGCAAAGTCAGGTACTGACTCAAACCT TGAACTACCAGTTGCAGCTGCTGCCACTGCCACAGCTGCAGCAGTGGTGGCAACCACAGCAGCTGTCAACAAGCAATATGAGCAGGGTGCACGGAGTGAT GGAGATGCAGATAGTGCTGGTTATGAGCCACGAGGTAGTGGGGACAAGGGTAGTGGAGGACGCAGCAGTGAAGGCCATGGCAGTGGTGGCCAAGAATGTG ATGCTTTAGGTGCCAATTCAGAAGGCGAGAGAATATCTGACAGATCAGTTGGAAATGATAGCTCAAAGTCTGATGCTGCGATGGATGATGTTGCAGAGTG TGAGATTCCATGGGATGAAATTTCCTTGGGTGAACGTATTGGACTTGGATCATATGGAGAGGTATATCGTGGAGACTGGCATGGAACAGAAGTTGCTGTG AAGAGGTTCCTAGACCAAGATATTACGGGTGAATCTCTTGCAGAATTCAGAAGTGAGGTTCGAATCATGAAGAGAGTCAGGCATCCCAATGTGGTTCTCT TCATGGGAGCTGTAACTCGTGCCCCAAATCTTTCAATTGTTACAGAGTTTCTTCCTAGAGGTAGCTTGTATAGATTACTTCACCGGCCTAACAATCAATT GGATGAGCGGAGGCGTTTGAGGATGGCCTTTGATGCTGCTCGGGGAATGAATTATTTGCACAACTGCACCCCAATGATAGTACACCGAGATTTGAAGTCC CCCAATCTTCTGGTTGATAAAAATTGGGTAGTTAAGGTATGTGATTTTGGATTATCGAGGATGAAGCACAGCACATTTCTCTCTTCAAGATCAACTGCAG GAACGGCTGAGTGGATGGCCCCAGAAGTGCTAAGAAATGAACCTTCAGACGAAAAGTGTGATGTTTATAGCTTCGGGGTTATATTGTGGGAGCTCTCTAC ATTGCAACAACCATGGGGTGGAATGAACCCAATGCAAGTTGTTGGTGCGGTTGGATTTCAACATCGCCGTCTCGACATTCCAAATGATATGGATCCTACA ATTGCAGATATTATTAGGAACTGCTGGAAGACAGATCCAAAATTAAGGCCAACATTTGCAGAAATCATGGCTGCGCTGAAGCCATTGCAGAAGCCTATAA CTGGTCCACAAGTGCCCAGACCAAATGCATCATTGAGAAGTGGGCGTGAGAAGGTTCAGCTGTTTCAAGAAGCTGAAGACCAGGCAGGCTAG
AA sequence Show only first row Show all	>Potri.015G040100.2 pacid=42776499 polypeptide=Potri.015G040100.2.p locus=Potri.015G040100 ID=Potri.015G040100.2.v4.1 annot-version=v4.1 MKNFLKKLHIMPNQSEDAEGSNSSRGHKSTNGSSPDNKSLHSRSQENKPFSGLSNWLSSVANRKSPSPPSSSNVTRGEKVEQPESISSSGFDVVSEAARR DSGSTTSRDPDIEEEYQIQLALELSASEDPEAVQIEAVKQISLGSCAPENTPAEVIAYRYWNYNALSYDDKVLDGFYDLYGIMTESTTDRMPPLVDLQGT PVSDGVTWEAVLVNRAADASLLKLEQKALEMTVKSRSECQIFIGSALVGRLAVLVSDYMGGSVGDPSNLSRAWRSLSYSLKATLGSMVLPLGSLTIGLPR HRALMFKVLADSVGIPCRLVKGHLYTGSDDVAMNFVKLDDGREYIVDLTADPGTLIPSDAAGSHIEYDETFFSSSPLSRDIDSSHIASSSSGHTSSFEEH SELGTLEKQSRLRNIAAVGNQSDGRSESHEGASLTRPSKSGEESTMSSDDFGKTSNAEKVPVRELPGRPIYPYAHARSPSWTEGVSSPAARRMKVKDVSQ YMIDAAKENPQLAQKLHDVLLESGVVAPPNLFTEIYAEQLDLSTAETKSPTVDKVDHKQRTEIRSVKDQDDLVPARFLPPLPPHRLPYKASSPGNPPDQS KPVEGSGVNHPFDTREITGLPIPLQSEVTPVKYVKKVPVAAAAAAAAAVVASSMVVAAAKSGTDSNLELPVAAAATATAAAVVATTAAVNKQYEQGARSD GDADSAGYEPRGSGDKGSGGRSSEGHGSGGQECDALGANSEGERISDRSVGNDSSKSDAAMDDVAECEIPWDEISLGERIGLGSYGEVYRGDWHGTEVAV KRFLDQDITGESLAEFRSEVRIMKRVRHPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLLHRPNNQLDERRRLRMAFDAARGMNYLHNCTPMIVHRDLKS PNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPNDMDPT IADIIRNCWKTDPKLRPTFAEIMAALKPLQKPITGPQVPRPNASLRSGREKVQLFQEAEDQAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73660			protein tyrosine kinase family...		Potri.015G040100 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Potri.001G276900 [exp]	4.89	0.7625
AT3G07720			Galactose oxidase/kelch repeat...		Potri.014G168300 [exp]	10.00	0.7375
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.001G041500 [exp]	10.90	0.7628
AT4G23500			Pectin lyase-like superfamily ...		Potri.001G100000 [exp]	10.95	0.6952
AT4G26540			Leucine-rich repeat receptor-l...		Potri.001G467300 [exp]	12.96	0.7338
AT1G51580			RNA-binding KH domain-containi...		Potri.010G251700 [exp]	18.97	0.7195
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122801 [exp]	19.44	0.7255
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Potri.018G062100 [exp]	19.67	0.7547	Pt-CYP711.2
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	20.17	0.7108	Pt-FRD3.1
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Potri.003G207100 [exp]	21.07	0.7438

Compare expression of checked genes

Potri.015G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.