Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18050 348 / 1e-119 unknown protein AT4G28100 205 / 5e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G049000 [exp] 513 / 0 AT3G18050 352 / 2e-121 unknown protein Potri.013G148700 [exp] 205 / 5e-64 AT4G28100 377 / 8e-132 unknown protein Potri.019G118300 [exp] 202 / 6e-63 AT4G28100 408 / 5e-144 unknown protein Potri.008G182733 [exp] 46 / 1e-06 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027253 [exp] 337 / 4e-115 AT3G18050 306 / 2e-103 unknown protein Lus10038961 [exp] 334 / 3e-114 AT3G18050 308 / 6e-104 unknown protein Lus10039742 [exp] 197 / 8e-61 AT4G28100 399 / 2e-140 unknown protein Lus10018524 [exp] 197 / 1e-60 AT4G28100 397 / 1e-139 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G040900.1 pacid=42776302 polypeptide=Potri.015G040900.1.p locus=Potri.015G040900 ID=Potri.015G040900.1.v4.1 annot-version=v4.1 ATGTCCCTAAACAACATAACTTTCCTCTTGTTACTGGCTCTCTTTCCTCTTCTCCTTCCGGGTTTGCCCAACCCGGACACGGCGACAATTCAACCATTTA AACCGAACCCATCACCACCAGCAATAATCCCTGCATTCCCTGAACAATCCAACCTTGCTGGTTGCCCATTAGACCTTCCCAATGAGCTCTTTCATGGCAT TAATTCAGCCTGTGGCAGTGGCTCCTCTGCAACTGGGCACCTCCACAGGACTCGTTGCTGTCCTGTTCTTGCAGCTTGGCTTTACTCTGCTTACTCTGCC ACCGCGCTTAGCAGAGCTAACAAAGTAATCCCAGCTACAGATACAGGTCGTTCACCATCGTATGACATGCCTTTGCTTCCTGATGATTCTGAGACTTGTG TTGATGGCCTCTCAAAAGGGTTGAAAGAGAAAGGCATAGAATTGTTTAAGCCTAATGAGACTTGTGATGTTGTGTATTGTTATTGTGGTATCAGACTGCA TCCTTTGAGTTGTCCTGAAGCTTTTTCTTTGAACCAAAATGGAAAGCTTGTTGGTGACAAGAGAGTTGAGAAATTAGAAAGAAATTGCTTGAGTGATAGC AATAATGTGAATGGATTTCCTGGTCTCGGTGGCTGCTCTAAGTGCTTAAACAGTCTTTATCTGCTTAACAACAAGAAGGCTTTAAATTCAAGCAAATCAG AGGATAGGACCACAAAAATGCACAACAAGGATTGCCAGCTGATGGGTCTCACATGGCTACTTGCGAAGAATCGCACGGCTTACATCCACACAGTTACTGC AGTCCTACGAGCTATGATGATGAGCATAGACGGTTCTGATCCAAGGTCGTGCACCCTTAGCAGTGATGGAATGCCTCTACCCGTTGATTCTTCCGAAATC TCCAACAATTCTTTCTCAATCTCCCATCAAGCTCCCATCTACGTAACCATTGCTGTAATTTGCTTGTTAAGTCTTCTACATCTTGTACCATCCGCCATTT TTTAG
AA sequence Show only first row Show all	>Potri.015G040900.1 pacid=42776302 polypeptide=Potri.015G040900.1.p locus=Potri.015G040900 ID=Potri.015G040900.1.v4.1 annot-version=v4.1 MSLNNITFLLLLALFPLLLPGLPNPDTATIQPFKPNPSPPAIIPAFPEQSNLAGCPLDLPNELFHGINSACGSGSSATGHLHRTRCCPVLAAWLYSAYSA TALSRANKVIPATDTGRSPSYDMPLLPDDSETCVDGLSKGLKEKGIELFKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGKLVGDKRVEKLERNCLSDS NNVNGFPGLGGCSKCLNSLYLLNNKKALNSSKSEDRTTKMHNKDCQLMGLTWLLAKNRTAYIHTVTAVLRAMMMSIDGSDPRSCTLSSDGMPLPVDSSEI SNNSFSISHQAPIYVTIAVICLLSLLHLVPSAIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18050			unknown protein		Potri.015G040900 [exp]	0	1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	2.00	0.9105
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	2.82	0.8845	EXPA3.1,PtEXPA16
AT5G50150			Protein of Unknown Function (D...		Potri.015G080300 [exp]	3.46	0.8835
AT3G05020		ACP1	acyl carrier protein 1 (.1)		Potri.013G031300 [exp]	4.24	0.8634
AT1G78172			unknown protein		Potri.002G096200 [exp]	4.47	0.8714
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Potri.015G089600 [exp]	6.00	0.8410
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	8.00	0.8572
AT5G45280			Pectinacetylesterase family pr...		Potri.003G046200 [exp]	8.66	0.8366
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	9.89	0.8600
AT4G15140			unknown protein		Potri.006G008000 [exp]	10.48	0.8681

Compare expression of checked genes

Potri.015G040900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.