Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18060 1001 / 0 transducin family protein / WD-40 repeat family protein (.1) AT2G01330 891 / 0 nucleotide binding (.1.2) AT5G52820 70 / 1e-12 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 69 / 2e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 62 / 7e-10 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G43770 61 / 9e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52360 62 / 1e-09 Coatomer, beta' subunit (.1.2) AT4G02730 60 / 2e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 60 / 2e-09 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT3G15980 60 / 3e-09 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G049200 [exp] 1184 / 0 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G058000 [exp] 69 / 3e-12 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.005G206600 [exp] 67 / 2e-11 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G250200 [exp] 62 / 6e-10 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.007G108200 [exp] 62 / 6e-10 AT5G64630 667 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.019G096900 [exp] 61 / 1e-09 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G221000 [exp] 61 / 1e-09 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 61 / 2e-09 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G051900 [exp] 60 / 2e-09 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027252 [exp] 1085 / 0 AT3G18060 979 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10038960 [exp] 1072 / 0 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10032444 [exp] 920 / 0 AT3G18060 884 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10042944 [exp] 920 / 0 AT3G18060 888 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10039597 [exp] 75 / 7e-14 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 70 / 1e-12 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 71 / 2e-12 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10014674 [exp] 69 / 2e-12 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 64 / 2e-10 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10033092 [exp] 64 / 2e-10 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.015G041200.1 pacid=42776476 polypeptide=Potri.015G041200.1.p locus=Potri.015G041200 ID=Potri.015G041200.1.v4.1 annot-version=v4.1 ATGACAGAGCTCGCAGAAACCTACGCTTGCGTTCCCTCGACCGAACGAGGCAGAGGGATCCTGATTTCCGGTCATCCAAAAACCAATAAAATCCTTTACA CTAACAACCGATCCATTCTCATCCTCAACCTTGACAACCCGCTTGACGTCTCCGTCTATGGTGAGCACGCTTACCAAGCCACCGTCGCACGGTACTCTCC CAATGGCGAGTGGATCGCCTCCGCTGATGTATCTGGGACTGTCAGGATCTGGGGTGCTTACAATGATCATGTCTTGAAAAAAGAATTTAAAGTACTCACC GGTCGGATCGATGATCTTCAGTGGTCCCCTGATGGGTTGAGGATCGTCGCCTCTGGGGATGGAAAAGGGAAATCTCTTGTTCGCGCTTTTATGTGGGATT CAGGGACTAATGTAGGGGAATTTGATGGGCATTCACGGCGAGTTTTGAGCTGTGCGTTTAAGCCAACTAGGCCATTTCGAATTGTCACGTGTGGAGAGGA TTTCTTGGTTAATTTCTATGAAGGACCGCCATTTAAATTCAAGTCATCTCACAGGGATCATTCAAATTTTGTCAATTGTATACGGTTTTCTCCAGATGGT AGCAAGTTTATCAGTGTAAGTTCTGATAAGAAAGGCATACTGTTTGACGGAAAGACAGGAGAGAAGATCGGAGAGTTGTCATCTGAGGATGGTCATAAGG GCAGTATTTATGCTGTTAGTTGGAGTCCTGATGGTAAACAGGTGCTAACAGTATCTGCCGACAAGTCTGCAAAAGTGTGGGAGATCTGTGATGATGGTAG TGGAAAGTTGACAAAAACTTTGACTTCTTCTGACTCTGGTGGAGTGGATGATATGCTAGTCAGTTGCCTTTGGCAGAATGATCATCTTGTCACTGTTTCT CTTGGTGGCACAATCAGCGTTTTCTCAGCTAGTGATCTTGGTAAAAGTGCACTGCAAATATCTGGTCATATGAAGAATGTTACCTCTTTATCTGTGCTTA AAAATGTCCCTAAGACAATCCTGTCCAGCAGCTATGATGGTTTGATAGTTAAATGGATTCAAGGCATTGGATACAGCGGCAAATTGCGGAGGAAGGAGAA TTCTCAAATTAAATGCTTAGCTGCTGCTGAAGAAGAAGTCATCACATCTGGTTTTGATAATAAGTTATGGAGAGTTCGTTTTCTTGGTGATCAATGTGGA GATGCAGATTCCATTGATGTCCGCAGCCAACCAAAGGATATAAGTCTTGCCCTTCTCTGCCCTGAGCTTGCTTTGGTTGCAATTGATTCAGGTGTTGTCA TGATTCGTGGTACAAAAGTAGTGTCAACCATCAATCTTGACTTTGCTGTGACGGCATCTGCAATTTCACCTGATGGAAGTGAAGCAATCATAGGTGGGCA GGATGGAAAATTGCACATATATTCTGTCACGGGTGATACACTCACAGAAGATGCAGTCCTTGAAAAACATCGTGGAGCTGTCAGTGTCATCCGCTACTCT CCAGATGTTTCAATGTTTGCTTCTGGTGATTTAAATAGGGAAGCTGTAGTTTGGGATCGTGCTTCCAGAGAGGTGAAGCTTAAAAACATGTTGTACCACA CTGCCCGCATAAACTGCCTTGCTTGGTCTCCTGATAGCAGCATGGTTGCTACTGGATCGCTTGACACCTGTATAATCATATATGAAATCGACAAGCCAGC ATCTAGTCGGATGACCATCAAGGGAGCTCACTTGGGTGGAGTTTATGGATTAGCATTTACTGATGATCGTAGTGTGGTAAGTTCTGGTGAGGATGCCTGT GTTCGTGTTTGGAAGGTAAATCCACAGTGA
AA sequence Show only first row Show all	>Potri.015G041200.1 pacid=42776476 polypeptide=Potri.015G041200.1.p locus=Potri.015G041200 ID=Potri.015G041200.1.v4.1 annot-version=v4.1 MTELAETYACVPSTERGRGILISGHPKTNKILYTNNRSILILNLDNPLDVSVYGEHAYQATVARYSPNGEWIASADVSGTVRIWGAYNDHVLKKEFKVLT GRIDDLQWSPDGLRIVASGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKFKSSHRDHSNFVNCIRFSPDG SKFISVSSDKKGILFDGKTGEKIGELSSEDGHKGSIYAVSWSPDGKQVLTVSADKSAKVWEICDDGSGKLTKTLTSSDSGGVDDMLVSCLWQNDHLVTVS LGGTISVFSASDLGKSALQISGHMKNVTSLSVLKNVPKTILSSSYDGLIVKWIQGIGYSGKLRRKENSQIKCLAAAEEEVITSGFDNKLWRVRFLGDQCG DADSIDVRSQPKDISLALLCPELALVAIDSGVVMIRGTKVVSTINLDFAVTASAISPDGSEAIIGGQDGKLHIYSVTGDTLTEDAVLEKHRGAVSVIRYS PDVSMFASGDLNREAVVWDRASREVKLKNMLYHTARINCLAWSPDSSMVATGSLDTCIIIYEIDKPASSRMTIKGAHLGGVYGLAFTDDRSVVSSGEDAC VRVWKVNPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18060			transducin family protein / WD...		Potri.015G041200 [exp]	0	1
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G128000 [exp]	1.00	0.9369
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Potri.006G004500 [exp]	5.29	0.9146
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.016G117200 [exp]	9.53	0.9082	CPK13.2
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.008G147800 [exp]	10.19	0.8643
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	11.22	0.9216
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.001G322500 [exp]	11.95	0.9051	Pt-DET3.1
AT3G12110		ACT11	actin-11 (.1)		Potri.008G055500 [exp]	14.89	0.9206	ACT4,Pt-PEAC14.2
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Potri.005G033400 [exp]	18.16	0.8958	Pt-ANP1.2
AT5G08580			Calcium-binding EF hand family...		Potri.005G087600 [exp]	19.33	0.8873
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	19.36	0.9142

Compare expression of checked genes

Potri.015G041200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.