Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18080 839 / 0 BGLU44 B-S glucosidase 44 (.1) AT3G18070 797 / 0 BGLU43 beta glucosidase 43 (.1.2) AT1G26560 505 / 5e-176 BGLU40 beta glucosidase 40 (.1) AT5G54570 492 / 2e-170 BGLU41 beta glucosidase 41 (.1) AT2G44480 474 / 1e-163 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 470 / 2e-162 BGLU15 beta glucosidase 15 (.1) AT5G44640 464 / 7e-160 BGLU13 beta glucosidase 13 (.1) AT5G42260 459 / 5e-158 BGLU12 beta glucosidase 12 (.1) AT1G02850 453 / 9e-156 BGLU11 beta glucosidase 11 (.1.2.3.4.5) AT5G36890 451 / 4e-155 BGLU42 beta glucosidase 42 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G049300 [exp] 969 / 0 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.008G094200 [exp] 518 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 508 / 2e-177 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.004G040700 [exp] 496 / 1e-172 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G409900 [exp] 494 / 2e-171 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.T085301 [exp] 492 / 9e-171 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 490 / 3e-170 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.010G178800 [exp] 488 / 2e-169 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.001G227300 [exp] 482 / 6e-167 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009644 [exp] 825 / 0 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10031234 [exp] 523 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10009013 [exp] 522 / 0 AT3G18080 516 / 0.0 B-S glucosidase 44 (.1) Lus10031808 [exp] 521 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 517 / 2e-180 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10036885 [exp] 506 / 2e-176 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10037098 [exp] 506 / 3e-176 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 493 / 3e-171 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10031251 [exp] 484 / 8e-168 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10020232 [exp] 483 / 3e-167 AT5G36890 699 / 0.0 beta glucosidase 42 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.015G041300.2 pacid=42775663 polypeptide=Potri.015G041300.2.p locus=Potri.015G041300 ID=Potri.015G041300.2.v4.1 annot-version=v4.1 ATGAGAGCAAAGGCATTGCCATTCTTGATGTTATTTCTCAGTATTACTCACTGTATCTCCCATGCAGCAGAACTCAATGGACCTTCAAAGCAGTCAGAGA CCATTAGTTTCGGAACAGCCGGAGGGCTGAGACAGGGCTTCCCTGAGGGGTTTGTCTTTGGAACTGCTACTTCTGCTTATCAAGTTGAAGGCATGGCTGA CAAGGATGGTCGTGGGCCTAGCATTTGGGATGCCTTTGTCAAAATTCCTGGGATCGTTGCCAATAATGCTACAGGGGAAGTGTCAGTGGACCAGTATCAC CGCTACAAGGAAGATGTAGATATCATGAAAAAGTTGAACTTCGATGCATACCGGTTCTCGATTTCATGGTCCAGAATTTTCCCTGATGGAGCTGGAAAAG TGAATTGGAACGGAGTTGCATACTATAATAGGTTGATCGACTACATGATCGAAAGAGGCATTACTCCATATGCGAATCTTTATCACTATGATCTTCCGCT AGCACTTGAGAAGAAGTATAATGGATTGTTGAGTAACCAAGTAGTGAAAGACTTTGCCGATTATGCAGACTTCTGTTTTAAGACCTTTGGAGATCGAGTA AAGAATTGGATGACATTCAATGAACCTAGAGTGGTGGCTGCCCTTGGATATGATAATGGATTCTTTGCTCCTGGAAGGTGTTCCAAAGCATTTGGGAATT GTACAGTCGGCAATTCTGCAACAGAGCCTTATATTGTTGCTCATCATTTGATTTTATCTCATGCAGCTGCTGTTCAGAGATATCGCGAAAAGTATCAAGA AAAACAAAAGGGAAGGATTGGAATTCTCTTGGATTTTGTTTATTACGAACCTCTTACCAGATCAAAAGCTGACAACTTAGCAGCTCAAAGAGCAAGAGAT TTTCATGTTGGATGGTTTATTCATCCTATTGTATATGGTGAATATCCGAAAACAATGCAAAATATTGTCGGGAGTAGGCTACCTAAGTTTACAGAAGAAG AAGTCAAGATGGTGAAGGGCTCAATGGATTTTGTGGGAATCAACCATTATACTACTTACTACATGTATGATCCACATCAGTCCAAACCAAAGAACTTGGG CTACCAGCAAGACTGGAATGCTGGATTTGCTTATAAGAAGAAGGGAGTGGAAATTGGTCCAAGAGCAAATTCTTATTGGCTTTATAATGTACCATGGGGT ATGTACAAGGCTGTGATGTACATCAAAGAGCGCTATGGAAACCCTACAATGATACTGTCTGAAAATGGGATGGATGATCCTGGTAATCTCACACGTTCCA AAGCAATGCAAGACACCACTAGAATTGGCTACTACAAGGCCTATTTGTCTCAACTGAAGAAAGCAGCTGATGATGGAGCCAATTTGGTTGGGTACTTTGC TTGGTCATTACTTGACAACTTTGAATGGAGATTAGGCTACACTTCAAGATTTGGAATTGTGTATGTTGATTACTCCAACCTTAAGAGGTACCCAAAAATG TCTGCCAATTGGTTCAAGCATCTCCTAGAGCGGAACAAACATTAA
AA sequence Show only first row Show all	>Potri.015G041300.2 pacid=42775663 polypeptide=Potri.015G041300.2.p locus=Potri.015G041300 ID=Potri.015G041300.2.v4.1 annot-version=v4.1 MRAKALPFLMLFLSITHCISHAAELNGPSKQSETISFGTAGGLRQGFPEGFVFGTATSAYQVEGMADKDGRGPSIWDAFVKIPGIVANNATGEVSVDQYH RYKEDVDIMKKLNFDAYRFSISWSRIFPDGAGKVNWNGVAYYNRLIDYMIERGITPYANLYHYDLPLALEKKYNGLLSNQVVKDFADYADFCFKTFGDRV KNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHHLILSHAAAVQRYREKYQEKQKGRIGILLDFVYYEPLTRSKADNLAAQRARD FHVGWFIHPIVYGEYPKTMQNIVGSRLPKFTEEEVKMVKGSMDFVGINHYTTYYMYDPHQSKPKNLGYQQDWNAGFAYKKKGVEIGPRANSYWLYNVPWG MYKAVMYIKERYGNPTMILSENGMDDPGNLTRSKAMQDTTRIGYYKAYLSQLKKAADDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSNLKRYPKM SANWFKHLLERNKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.015G041300 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Potri.019G101500 [exp]	1.41	0.9630
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050300 [exp]	1.41	0.9619
					Potri.001G021300 [exp]	4.00	0.9524
AT5G14410			unknown protein		Potri.001G342100 [exp]	4.24	0.9524
AT2G41990			unknown protein		Potri.004G180900 [exp]	6.08	0.9049
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.005G059500 [exp]	6.92	0.9481
					Potri.008G169450 [exp]	7.93	0.9473
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.006G114200 [exp]	8.36	0.9298
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	10.00	0.9227	ATML1.2
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.001G097901 [exp]	10.39	0.9179

Compare expression of checked genes

Potri.015G041300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.