Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18090 584 / 0 5'-3' exonuclease family protein (.1.2) AT1G29630 305 / 1e-94 5'-3' exonuclease family protein (.1.2.3) AT5G26680 74 / 9e-14 5'-3' exonuclease family protein (.1.2) AT2G02550 48 / 5e-06 PIN domain-like family protein (.1.2) AT3G48900 47 / 2e-05 single-stranded DNA endonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077001 [exp] 310 / 2e-96 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.013G000700 [exp] 82 / 2e-16 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.017G070500 [exp] 45 / 0.0002 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027250 [exp] 579 / 0 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10038958 [exp] 355 / 2e-118 AT1G18090 315 / 5e-103 5'-3' exonuclease family protein (.1.2) Lus10011991 [exp] 299 / 2e-92 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10002782 [exp] 288 / 3e-88 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10004608 [exp] 254 / 1e-78 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10000270 [exp] 80 / 7e-16 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039423 [exp] 49 / 4e-06 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10005744 [exp] 49 / 1e-05 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10027451 [exp] 46 / 9e-05 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF00752 [poplar] [flax] XPG_N XPG N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G041400.1 pacid=42775082 polypeptide=Potri.015G041400.1.p locus=Potri.015G041400 ID=Potri.015G041400.1.v4.1 annot-version=v4.1 ATGGGTGTCAAAGATCTGCTCAAGTTCATGAAACCCTACATTGAACCTGTTCACATAAAAAAATATAATGGCAAACGTGTGGGTATTGATGCTTATAGTT GGCTACATAAAGGAGCTTATTCATGTAGCATGGAGATTTGTTTAAATTCAAATAGCGAAAAGAAGTTGCGGTATTTAGACTATTTTATGCACAGAATTAA TCTACTTAGACACTACAAGATTACACCAGTTGTTGTTTTTGATGGTGGAAATATTCCCTGTAAAGCTGGAACTGAACAAGACAGATACAGGAAAAGAAAA GCAAATCGTGAGTTGGCAATGGAGAAGCTCAAAGAAGGGAATGCTAATGCTGCTACTGAATTTTTTCAGAGAGCAATTAGCATTACCCCATTGATGGCAC ATCAACTGATTCAGATCTTGAGATCGGAAAACATAGAATTTTTGGTAGCTCCATACGAGGCTGATGCACAGTTAGCACATTTAGCTAGCCTTGAAGCAGA AAGAGGTGGTATAGCAGCTGTTATAACAGAGGACAGTGATCTATTGGCATATGGTTGCCAAGCTACTATTTTTAAGATGGATCGGTACGGCAATGGTGAG GAGATAGTTTTAGACAAGGTTTTTGATGCTGCAGCTCGCAAACCTTCATTCCAATGTTTTGATAAGGAATTGTTCATGGGTATGTGTGTCTTAGCTGGTT GTGATTTCCTTCCATCTGTTCCTGGAATAGGGATTTCGAAGGCTCATTCTTATGTGTCCAAGTATCGGAACTTGGATCGTGTTTTATCAGTTTTGAAGTT GGAGAAAGGTCGACAAATGCCTGAAGATTATTCAAAATCTTTCATAGAGGCTCTAGCAGTTTTCCAGCACGCCAGAATATATGATTCGAACAATAAGAGA CTGGAACACATGAAGCCTGTCCCTCAAAATTTACTGGAATCTTTGGAAGGGAAGCTGGATTTCCTTGGACCAGAAATTCCTCCTTCCGTAGCAACTGCAA TTGCTGAAGGGAACTTGGATCCAACAACCATGGAGGCCTTTGCTTGTTTTCGAAGTCCTGGACGTCTTCCAGACCCTATTTTCATTCAAAATCCTTCTCA ACTTCAGAAACCCAAAGCTAATGTTGTATCCATACAGATGAACAGCTCGATGGCCTTTCTTTCCTATAAATCTGAAGGAGACAGTTCAGGTATGGTACTG AAGCAGGAGCCACTTTCCACTGAAAGTATGTATATCAGCGAAGCTCTAGCACTTCAGAAACTAATCTCGCCACCTAAAGTTAATATTACAGAAACAGCAA TGGTTCCCAATGATGTTCCACTGAAAGTTCCTAAGAACCCATTCAGGATTCAACAAGTTGAAGAAATCAACTTGGACCAGAAAGATAGCAGCACTGGACA AATCTCAGTTGTGATTGACCATGAAAAGATGAATATACCATGGGCCACTCCCGATGACATCCAGTCAGAGGTTCATGATAAAAGTCCTCCCAAGAAAAGA AAACTCAACAAAGTTCACTCAGATCAGGGAGCCAGCATTACTGCACAAGCTTCAGTGGTAACCAAGGCAGAAAACTCAGACAACTTGTGTGTTGCCGAGT CCCAAGAAAATGTGAATTCCATGCCTAAAATGACTTCTAATGGAAAGGGTAAAAATGAAAAGGCAAAGAGAAGCAAGCACATGAGTCTGGAGAACACGAA GAATACTATTTTGAATTTCTTTTCTCGAGCGTAA
AA sequence Show only first row Show all	>Potri.015G041400.1 pacid=42775082 polypeptide=Potri.015G041400.1.p locus=Potri.015G041400 ID=Potri.015G041400.1.v4.1 annot-version=v4.1 MGVKDLLKFMKPYIEPVHIKKYNGKRVGIDAYSWLHKGAYSCSMEICLNSNSEKKLRYLDYFMHRINLLRHYKITPVVVFDGGNIPCKAGTEQDRYRKRK ANRELAMEKLKEGNANAATEFFQRAISITPLMAHQLIQILRSENIEFLVAPYEADAQLAHLASLEAERGGIAAVITEDSDLLAYGCQATIFKMDRYGNGE EIVLDKVFDAAARKPSFQCFDKELFMGMCVLAGCDFLPSVPGIGISKAHSYVSKYRNLDRVLSVLKLEKGRQMPEDYSKSFIEALAVFQHARIYDSNNKR LEHMKPVPQNLLESLEGKLDFLGPEIPPSVATAIAEGNLDPTTMEAFACFRSPGRLPDPIFIQNPSQLQKPKANVVSIQMNSSMAFLSYKSEGDSSGMVL KQEPLSTESMYISEALALQKLISPPKVNITETAMVPNDVPLKVPKNPFRIQQVEEINLDQKDSSTGQISVVIDHEKMNIPWATPDDIQSEVHDKSPPKKR KLNKVHSDQGASITAQASVVTKAENSDNLCVAESQENVNSMPKMTSNGKGKNEKAKRSKHMSLENTKNTILNFFSRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18090			5'-3' exonuclease family prote...		Potri.015G041400 [exp]	0	1
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	1.00	0.9498
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	1.73	0.9452
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	2.00	0.9440
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	3.46	0.9416
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	4.47	0.9439	Pt-SOM1.1,CHR905
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	6.70	0.9363
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	7.34	0.9467	TOP2.3
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	8.36	0.9345
AT1G61000			unknown protein		Potri.007G116200 [exp]	12.16	0.9137
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.019G021800 [exp]	12.40	0.9320	Pt-CDC20.3

Compare expression of checked genes

Potri.015G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.