Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GBF1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18080 537 / 0 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 533 / 0 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 528 / 0 RACK1C_AT receptor for activated C kinase 1C (.1) AT3G49660 122 / 3e-32 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 102 / 1e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 98 / 3e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 97 / 6e-22 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 95 / 3e-21 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 94 / 5e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 92 / 2e-20 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052700 [exp] 592 / 0 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 112 / 2e-28 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 108 / 6e-27 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 104 / 1e-25 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 98 / 3e-22 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 97 / 6e-22 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 92 / 2e-20 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.010G255400 [exp] 92 / 2e-20 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 90 / 9e-20 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017570 [exp] 550 / 0 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017569 [exp] 538 / 0 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003080 [exp] 496 / 2e-178 AT1G18080 506 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 109 / 2e-27 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 108 / 4e-27 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 108 / 9e-27 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 105 / 1e-25 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 96 / 9e-22 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 96 / 1e-21 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 95 / 2e-21 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.015G041600.1 pacid=42775053 polypeptide=Potri.015G041600.1.p locus=Potri.015G041600 ID=Potri.015G041600.1.v4.1 annot-version=v4.1 ATGGCCTCCGATACCCTCGTTCTTCGCGGCACCATGAGAGCTCACACTGACCAGGTTACAGCAATAGCTACACCAATTGACAACTCTGACATGATTGTTA GTTCATCCCGCGACAAATCCATCATTCTTTGGAGCTTAACCAAAGATGAAAAAACCTACGGTGTCGCTCGCCGTCGTTTGACCGGGCACTCCCACTTCGT CCAAGATGTTGTCCTTTCCTCGGATGGTCAGTTTGCTTTGTCCGGTTCCTGGGACGGAGAGCTCCGTCTCTGGGACTTGGCTACTGGTGTCTCTGCTCGC CGATTTGTTGGTCACACCAAGGATGTGTTGTCTGTTGCTTTCTCTATTGATAACAGACAGATTGTTTCTGCTTCCAGGGATAAGACAATCAAGCTGTGGA ATACTCTTGGTGAATGCAAGTATACCATTCAAGAGGCTGAGTCTCATACCGATTGGGTTTCGTGTGTGCGTTTTAGCCCAAATACGTTGCAGCCCACGAT TGTTTCTGCTTCGTGGGACAAGACAGTAAAGGTCTGGAATTTGACTAACTGTAAGTTGAGGTCTACCCTTGCAGGACATGGTGGGTATGTGAACACTGTG GCTGTTTCGCCAGATGGGTCATTGTGTGCTAGTGGAGGGAAAGATGGGGTGATTTTGTTGTGGGATTTGGCTGAAGGAAAGAGGCTTTATAGTTTGGATG CAGGTGCGGTTATTAATGCTTTGTGCTTTAGCCCCAATAGGTACTGGCTATGTGCTGCCACCGAGAATAGCATTAAGATTTGGGATCTGGAGAGTAAGTT GGTTGTTGATGATTTGAAGGTTGATCTCAAAGCTGAAGCTGAGAAATCCGAGGGTACTACCGGTACTGCTGCTAGTACCACGAAGAAGATCTATTGCACA TGCTTGAACTGGAGTGCTGATGGAAGCACCTTGTTCAGTGGTTATACTGATGGTGTCATTAGAGTCTGGGGAATTGGTCGCTATTAG
AA sequence Show only first row Show all	>Potri.015G041600.1 pacid=42775053 polypeptide=Potri.015G041600.1.p locus=Potri.015G041600 ID=Potri.015G041600.1.v4.1 annot-version=v4.1 MASDTLVLRGTMRAHTDQVTAIATPIDNSDMIVSSSRDKSIILWSLTKDEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVSAR RFVGHTKDVLSVAFSIDNRQIVSASRDKTIKLWNTLGECKYTIQEAESHTDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLTNCKLRSTLAGHGGYVNTV AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVINALCFSPNRYWLCAATENSIKIWDLESKLVVDDLKVDLKAEAEKSEGTTGTAASTTKKIYCT CLNWSADGSTLFSGYTDGVIRVWGIGRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.015G041600 [exp]	0	1	Pt-GBF1.2
AT2G41840			Ribosomal protein S5 family pr...		Potri.016G055000 [exp]	1.00	0.9654	Pt-RPS2.3
AT3G09630			Ribosomal protein L4/L1 family...		Potri.016G084400 [exp]	1.41	0.9654	Pt-RPL4.2
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	3.16	0.9492
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.012G139400 [exp]	4.47	0.9502
AT1G27400			Ribosomal protein L22p/L17e fa...		Potri.012G096600 [exp]	4.89	0.9518	Pt-RPL17.1
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Potri.015G112900 [exp]	6.32	0.9367	P40.4
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.014G053300 [exp]	6.48	0.9397	RPS11.4
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454101 [exp]	7.48	0.9396
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.004G113900 [exp]	9.16	0.9417
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.018G140300 [exp]	9.48	0.9287

Compare expression of checked genes

Potri.015G041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.