Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PP2.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48635 439 / 1e-154 PEX3-2, PEX3 PEROXIN 3-2, peroxin 3 (.1.2) AT3G18160 423 / 2e-148 PEX3-1 peroxin 3-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G049700 [exp] 685 / 0 AT1G48635 441 / 5e-155 PEROXIN 3-2, peroxin 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041998 [exp] 456 / 1e-160 AT1G48635 436 / 2e-153 PEROXIN 3-2, peroxin 3 (.1.2) Lus10009676 [exp] 441 / 4e-155 AT1G48635 404 / 2e-140 PEROXIN 3-2, peroxin 3 (.1.2) Lus10009038 [exp] 418 / 8e-140 AT1G18070 654 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018002 [exp] 197 / 3e-61 AT1G48635 201 / 2e-63 PEROXIN 3-2, peroxin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04882 [poplar] [flax] Peroxin-3 Peroxin-3
Representative CDS sequence Show only first row Show all	>Potri.015G041700.1 pacid=42776375 polypeptide=Potri.015G041700.1.p locus=Potri.015G041700 ID=Potri.015G041700.1.v4.1 annot-version=v4.1 ATGCTTTCTTTAAGGAATTTTTGGAGAAGGCATAAGAGGAAAATTCTTATTACATCAGGTGTTTTAGGAAGTGGGTACTTTCTTTGTAAACTATACAATG CTCACCAACAGAAGCTCGCTGATCTGGAGAGGGAACTTGCTCGCCAAAGGGCAAATGATGAACTCATCAAGGCCCAACTGCAAGACCATTTCGAGAATGT GCAATTAATAGCTGATACAACAACATTGCCTCATGCAATGCAATATTTAAGAACTCGGATAGCAGAAGAACTGGACCTTTCTCAGCTCACTGAAAGGCTA CAGAAAGGGAAGGGTCAGCCAACCACGCTTACCTCTTCAGAGAAACTTGAACTGTGGGACAGACTCAAAATCCTAAGTTTCACACAAATGTTGGTTTCGC TGTGGGCTGTGACAATGCTTAGCTTATACATCAAAGTTCAAGTAAATATTCTAGGAAGACATTTGTATATTGATACTGCTCGTGGCCTTGGAAGCTCACT TTTACTTGAGAATGTTGATCTTGTTGATAGGGATGACCAGCAAAAGTTTTTGGCTAGTGCTGATTTTCTCGCAAATAATGGCTTGCTGGCATTGATTTCA AATATCCAAGCTGTGGTAACAGAAGTTCTTGAGGGAAAGAAGCTGACAGATTTGTTCAACACCACATCACTTCATGAAACTGTCATGCAAATACTTAACA AGTTCATGAGCATGGGAAGTCCGCACCAATGGATAGACTACTTAATGCCCGAAGATTGTGGGCACTACAAACTAGGCCCAAGCTCCAGCATTGATGACAT GATCCTTCCTGATAGCATGAATTTTGATCAGCTTATGGTGGAGGCACGGGCAGTGCTATCAAGTGCTGAATTTGGTAAAATCATGGAAATATCTTTGAAA GTAGCGGTGGATGCACTGGTAGATGATATGGAGGCTCAGAGCCAGTCCACTGGGGCCAGTCTGACATTAGGGATGCCACTGGCAAAACTCCTATCACGAG TTCTGCAGATAGTACCATCTTTACTCGGTGAAGCAAGCCAAAACCAGATTATCCAAATCATCCGGAATGTACCAGAAGTTGAACTATTCTTCACTCTCCT CTATGCAAACAACCTCTTAGACTAG
AA sequence Show only first row Show all	>Potri.015G041700.1 pacid=42776375 polypeptide=Potri.015G041700.1.p locus=Potri.015G041700 ID=Potri.015G041700.1.v4.1 annot-version=v4.1 MLSLRNFWRRHKRKILITSGVLGSGYFLCKLYNAHQQKLADLERELARQRANDELIKAQLQDHFENVQLIADTTTLPHAMQYLRTRIAEELDLSQLTERL QKGKGQPTTLTSSEKLELWDRLKILSFTQMLVSLWAVTMLSLYIKVQVNILGRHLYIDTARGLGSSLLLENVDLVDRDDQQKFLASADFLANNGLLALIS NIQAVVTEVLEGKKLTDLFNTTSLHETVMQILNKFMSMGSPHQWIDYLMPEDCGHYKLGPSSSIDDMILPDSMNFDQLMVEARAVLSSAEFGKIMEISLK VAVDALVDDMEAQSQSTGASLTLGMPLAKLLSRVLQIVPSLLGEASQNQIIQIIRNVPEVELFFTLLYANNLLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Potri.015G041700 [exp]	0	1	PP2.5
AT4G09810			Nucleotide-sugar transporter f...		Potri.005G196500 [exp]	2.44	0.8027
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.006G040100 [exp]	4.47	0.7325
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.004G177500 [exp]	4.47	0.8172
AT1G55270			Galactose oxidase/kelch repeat...		Potri.001G008000 [exp]	9.94	0.7200
AT5G40580		PBB2	20S proteasome beta subunit PB...		Potri.017G071100 [exp]	10.24	0.8259	PBB1.1
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.009G136900 [exp]	12.00	0.7863
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.018G133000 [exp]	17.66	0.7265
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.008G214100 [exp]	19.36	0.7410
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	21.35	0.7453
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Potri.019G108900 [exp]	21.67	0.6842

Compare expression of checked genes

Potri.015G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.