Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29460 197 / 8e-64 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29470 194 / 1e-62 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT2G29420 194 / 1e-62 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT2G29490 194 / 3e-62 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT3G09270 191 / 3e-61 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29480 191 / 3e-61 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29450 176 / 2e-55 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT1G10370 171 / 2e-53 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT2G29440 165 / 5e-51 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT1G10360 164 / 2e-50 GST29, ATGSTU18 GLUTATHIONE S-TRANSFERASE 29, glutathione S-transferase TAU 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052200 [exp] 344 / 1e-121 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G070900 [exp] 232 / 2e-77 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023340 [exp] 218 / 7e-72 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023200 [exp] 216 / 7e-71 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.010G061200 [exp] 211 / 5e-69 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.013G072400 [exp] 208 / 5e-68 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.002G254000 [exp] 208 / 6e-68 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.006G024200 [exp] 207 / 1e-67 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175100 [exp] 207 / 2e-67 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001491 [exp] 207 / 3e-67 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10007897 [exp] 198 / 6e-64 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 196 / 4e-63 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10041654 [exp] 192 / 1e-61 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021103 [exp] 190 / 1e-60 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10016471 [exp] 186 / 4e-59 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 183 / 4e-58 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 182 / 7e-58 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10035241 [exp] 180 / 6e-57 AT2G29420 188 / 5e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10017208 [exp] 176 / 3e-55 AT3G09270 212 / 3e-69 glutathione S-transferase TAU 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G042000.1 pacid=42775121 polypeptide=Potri.015G042000.1.p locus=Potri.015G042000 ID=Potri.015G042000.1.v4.1 annot-version=v4.1 ATGGCAGGAGCGGTGAAACTGATTGGATCTTATACAAGCCTGTTCTGCACAAGGGTTGAATGGGCTTTGAAGCTTAAAGGAGTGCAATACGAGTACGTTG AAGATGATGTATTCAATAAAAGTCCCCTTCTTCTTAAGCACAACCCTGTTCACAAGAAGGTCCCCGTTCTTGTCCATGATGACAAACCAATTCCTGAGTC ACTCGTCATCCTTCAATACATCGATGAGACATGGAATGATAATAACTTGCTGCCTCAAGACTCGTATGAGAGAGCCATGGCTCATTTTTGGGCTAAATTT ACTGAGGAGAAGTGTCTGATGGAAACATTTACGGCTGCCTATAAAGAGGGAGAAGAAAAGGAGAGGGCCATAGAGTCTGCACAAGAATCATTTGCGTTTC TTGAGAAGCTGATTCAAGGGAAGAAATTCTTCAGTGGAGATGATAAGATAGGTTATTTAGATCTAGCAATGGGCTGGATTCCCCTCTGTCTTGATATTAT AGAAGAAGTTGGAGACATGAAACTGGTTGATGCTGAGAAGTTCCCATCTCTTCTTGAATGGGCTCAGAACTTCACTGAAATCCCACTCATCAAAGAGCGT CTTCCACCAAGAGATGCGCTCTTCAACTACTTCCATAAAATTGTAGGCTTAAATCGCTCAAAAAACCATTAA
AA sequence Show only first row Show all	>Potri.015G042000.1 pacid=42775121 polypeptide=Potri.015G042000.1.p locus=Potri.015G042000 ID=Potri.015G042000.1.v4.1 annot-version=v4.1 MAGAVKLIGSYTSLFCTRVEWALKLKGVQYEYVEDDVFNKSPLLLKHNPVHKKVPVLVHDDKPIPESLVILQYIDETWNDNNLLPQDSYERAMAHFWAKF TEEKCLMETFTAAYKEGEEKERAIESAQESFAFLEKLIQGKKFFSGDDKIGYLDLAMGWIPLCLDIIEEVGDMKLVDAEKFPSLLEWAQNFTEIPLIKER LPPRDALFNYFHKIVGLNRSKNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29460		GST22, ATGSTU4	GLUTATHIONE S-TRANSFERASE 22, ...		Potri.015G042000 [exp]	0	1
					Potri.019G017600 [exp]	2.44	0.9739
					Potri.013G045366 [exp]	3.00	0.9632
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.015G104400 [exp]	4.24	0.9503
					Potri.012G124666 [exp]	4.47	0.9556
					Potri.013G045333 [exp]	5.65	0.9632
AT1G77810			Galactosyltransferase family p...		Potri.002G089800 [exp]	6.00	0.9493
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140500 [exp]	9.59	0.9559
AT3G01050		MUB1	membrane-anchored ubiquitin-fo...		Potri.017G090700 [exp]	10.09	0.9367
AT2G32030			Acyl-CoA N-acyltransferases (N...		Potri.010G085600 [exp]	10.48	0.9488
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.003G169100 [exp]	12.84	0.9403

Compare expression of checked genes

Potri.015G042000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.