Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48650 1628 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G01130 1358 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G04895 1306 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 780 / 0 RNA helicase family protein (.1) AT1G58060 471 / 1e-143 RNA helicase family protein (.1) AT1G58050 421 / 6e-126 RNA helicase family protein (.1) AT2G30800 276 / 3e-76 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT5G13010 273 / 4e-75 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT1G06670 259 / 2e-70 NIH nuclear DEIH-boxhelicase (.1) AT4G18465 238 / 4e-66 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117800 [exp] 1470 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G246000 [exp] 1326 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 1319 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 796 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 473 / 2e-144 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 271 / 2e-74 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.010G057200 [exp] 227 / 2e-62 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.012G034200 [exp] 169 / 3e-42 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.002G192500 [exp] 165 / 9e-42 AT3G62310 1276 / 0.0 RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009012 [exp] 1539 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009643 [exp] 1412 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10007938 [exp] 1399 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10013479 [exp] 1399 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 1311 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034126 [exp] 1304 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009022 [exp] 746 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 511 / 9e-165 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10029806 [exp] 276 / 1e-76 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10020727 [exp] 273 / 7e-75 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.015G042500.1 pacid=42775295 polypeptide=Potri.015G042500.1.p locus=Potri.015G042500 ID=Potri.015G042500.1.v4.1 annot-version=v4.1 ATGCCTTGCTGTATCAGAATGAACACAATCATGTCTCTAAGACCCACTTCCACCAAAACAGCAAAATCTCTCCATTTCCATTACAAAGCTAAAACCACCC TTAAACCCTCTTTATTTTCTTCATCATCTTTTGTTTCCGTTAGAAACCACCAAACCCTATCTTTTACTAACCAGCCATTGCCCCGCCCTCTTCGATTCAG GCATCATGGGATTTTTTCGTTCAAGTGTTTTGGTGTTGCAGGTTTTCATTCCAAGAAACTTGCTTTGCCATATACCAGGTCTATGCAGAGCTTTAATTAT GGCAGGTTTGCTTACCGGGATGTTTCTAGTGATGAATCCGATTATGAATTAGGCTCCTCCCAGAAGGAAATGACTGGCTCGACCCTTGACAACGTTGATG ATTGGAAATGGAAGTTAACCATGCTTCTTCAAAGTAAAGATCAGCAAGAAGTTGTATCCAGGGAGAAAAAGGACAGACGTGATTTTGGGCATCTATCAGC TATGGCAACCCGAATGGGTTTACACAGCCGTCAATATTCAAGAATTGTTGTGTTTAGTAAAGTCCCCTTGCCAAATTACAGACATGATCTGGATGATAAG CGTCCACAGAGAGAGGTGATCTTACCTTTTGGGTTACAAAGAGAAGTAGATGCTCATTTCAAAGCTTACATTTCCAAAAAGCCCACGAGCAGAGGATTAT TTCCTCCCAATTCCTTGTCAAGATCAAACGGTGGTAGGAGTATGGACACCGATGAAAGAATCTATGAGCGGCCAGAACTGTCAGTACAAAATAGTGTTGC CATGGAGAGAATTCTTAGTCGGAAGAGTTTGCAGCTTCGTAATCAACAAGAAAAGTGGCAGGAATCTCCTGAGGGCCAAAAGATGATTGAATTTCGTAGA AGCCTTCCTGCATATAAAGAAAAGGATGTGCTGTTAAAAGCCATATCTGAAAATCAGGTTATTGTTGTCTCTGGTGAAACTGGTTGTGGTAAAACCACAC AACTTCCTCAATACATACTAGAATCTGAGATTGAAGCTGCTCGCGGAGCTGCATGTAGTATTATATGTACACAGCCTAGAAGAATATCGGCTATGGCTGT TTCTGAAAGAGTTGCTGCAGAACGAGGGGAGAAACTGGGAGAATCAGTTGGTTATAAAGTTCGGCTCGAGGGTATGAGAGGAAGGGACACTCGACTTCTA TTCTGTACGACTGGCATATTGTTGAGGAGATTACTTCTGGACAGAAATTTAAAAGGTGTAACTCATGTCATCGTTGATGAGATTCATGAACGCGGAATGA ATGAAGATTTCCTTCTTATTGTACTGAGAGATCTGCTTCCTCGTCGACCGGAGTTGAGATTGATTTTGATGAGTGCAACCTTAAATGCGGAGCTTTTCTC TTCCTACTTTGGCGATGCTCCTGCAATTCATATTCCTGGTTTTACATATCCTGTCCGTGCACATTTTTTAGAGAATATTCTTGAAATAACCGGGTATCGG CTGACTCCTTACAATCAAATCGACGATTATGGTCAAGAAAAGACGTGGAAAATGCAAAAACAAGCTCAAGCTTTCAAAAAGAGGAAGAGCCAGATTGCTT CTTCTGTTGAGGATGCCCTTGAAGTTGCTGACTTTAAGGGGTGTAGTTCACGCACTCGGGAGTCTTTATCTTGTTGGAATCCTGACTCAATTGGTTTTAA CCTCATTGAGCATGTTCTTTGTCACATAGTTAAGAAAGAGAGACCTGGTGCTGTGTTGGTTTTTATGACTGGTTGGGATGACATTAACTCTTTAAAAGAT CAGCTACAAGCTCATCCTATCTTGGGTGATCCTTGCAGAGTATTGTTACTGGCCTGCCATGGTTCCATGGCCAGCTCTGAGCAGAGGTTAATATTTGATA AACCTGAAGATGGAGTGAGGAAAATTGTCTTAGCTACGAATATGGCTGAGACTAGTATTACTATCAATGATGTGGTATTTGTGGTTGACTGTGGAAAGGC AAAGGAGACATCGTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCATCCTGGATCTCAAAGGCTGCTGCCCGGCAAAGAAAGGGAAGAGCTGGTCGT GTTCAACCTGGCGAGTGTTATCATCTTTATCCCAGATGTGTTTATGATGCATTTGCTGACTATCAATTACCAGAACTTTTGAGGACACCTTTACAGTCTT TGAGTTTGCAAATCAAAAGTCTCCAACTTGGAAGTATATCAGAGTTCCTATCAAGGGCCCTGCAGCCACCAGAGCCTCTCTCGGTTCAAAATGCTGTTGA GTATTTGAAGTTGATTGGGGCTTTAGATGAGCATGAAAATCTGACAGTGCTAGGACGTCATTTGTCAGTGCTTCCAGTTGAGCCTAAGCTCGGGAAAATG CTCATATTGGGGACCATTTTCAACTGCCTAGATCCAATAATGACTGTCGTTGCTGGTCTCAGTGTTAGAGATCCATTCTTAATACCATTTGACAAGAAGG ATCTTGCAGAGTCTGCAAAAGCACAATTCGCTGGTCGTGATTGCAGTGACCATCTTGCACTTGTCCGGGCCTATAATGGTTGGAAAGATGCAGAAAGACA ACAATATGGTCATGAGTACTGTTGGAAGAATTTTCTTTCTGCACAAACTCTAAAAGCCATTGATTCCTTAAGGAAACAATTCTTTTATTTGCTCAAGGAT ACTGGACTGGTTGATAAGCAGATAGAAAATTGCAATTCAAGGAGCATTGATGAGCATCTTATGCGAGCAGTCATCTGTGCTGGCCTGTTCCCTGGATTAT GCTCTGTTGTGAACAAAGAGAAGTCGATAACACTGAAAACAATGGAGGATGGCCAGGTGCTTCTGTACTCGAATTCTGTGAATGCTGGGGTGCCCAAAAT TCCATACCCTTGGTTAGTTTTCAATGAAAAAGTGAAAGTGAATTCAGTTTTTCTCCGTGATTCAACTGGTGTTTCTGATTCCGTGCTGCTTTTATTTGGA GGAAACATTGAGAAGGGTGGACTAGATGGGCACCTAAAAATGTTGGGAGGATACTTGGAATTTTTTATGAAACCCACATTAGGAGATATGTATTTAAGCT TAAAACGTGAGCTTGAGGAACTGATTCAGAATAAACTTCTAGATCCCAAGTTGGATATACAGTCCCACAATGAGCTTCTGATGGCAATAAGATTGCTGGT TTCAGAGGACCAATGTGAGGGTAGATTTGTATTTGGTCGACAGCTGCCAGCACCCTCAAAGAAGGCAGAAAAGGCCAAAAATGTTGCTGGAGATGGGGGT GACAATTCTAAGAATGAGCTTCAAACTTTACTTGCCAGGGCAGGGCATGAATCACCCGCTTATAAGACAAAACAACTGAAAAACAACCAGTTCCGTTCTA CTGTTTTCTTTAACGGGCTGGACTTTGCTGGGCAGCCTTGCAGCAGTAAGAAACTTGCAGAAAAGGATGCAGCTGCTGCAGCTCTACTGTGGTTGAAGGG GGAGACACATTCGTATTCCAGAAATACTGACCACTTCTCGGTGCTTCTGAAGAAGAGCAAGACCACAAATCAAAACAGAATCCCAGTTCGTGGTGGTAAA TGGAATTAG
AA sequence Show only first row Show all	>Potri.015G042500.1 pacid=42775295 polypeptide=Potri.015G042500.1.p locus=Potri.015G042500 ID=Potri.015G042500.1.v4.1 annot-version=v4.1 MPCCIRMNTIMSLRPTSTKTAKSLHFHYKAKTTLKPSLFSSSSFVSVRNHQTLSFTNQPLPRPLRFRHHGIFSFKCFGVAGFHSKKLALPYTRSMQSFNY GRFAYRDVSSDESDYELGSSQKEMTGSTLDNVDDWKWKLTMLLQSKDQQEVVSREKKDRRDFGHLSAMATRMGLHSRQYSRIVVFSKVPLPNYRHDLDDK RPQREVILPFGLQREVDAHFKAYISKKPTSRGLFPPNSLSRSNGGRSMDTDERIYERPELSVQNSVAMERILSRKSLQLRNQQEKWQESPEGQKMIEFRR SLPAYKEKDVLLKAISENQVIVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMRGRDTRLL FCTTGILLRRLLLDRNLKGVTHVIVDEIHERGMNEDFLLIVLRDLLPRRPELRLILMSATLNAELFSSYFGDAPAIHIPGFTYPVRAHFLENILEITGYR LTPYNQIDDYGQEKTWKMQKQAQAFKKRKSQIASSVEDALEVADFKGCSSRTRESLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD QLQAHPILGDPCRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGR VQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLSLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKLIGALDEHENLTVLGRHLSVLPVEPKLGKM LILGTIFNCLDPIMTVVAGLSVRDPFLIPFDKKDLAESAKAQFAGRDCSDHLALVRAYNGWKDAERQQYGHEYCWKNFLSAQTLKAIDSLRKQFFYLLKD TGLVDKQIENCNSRSIDEHLMRAVICAGLFPGLCSVVNKEKSITLKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFG GNIEKGGLDGHLKMLGGYLEFFMKPTLGDMYLSLKRELEELIQNKLLDPKLDIQSHNELLMAIRLLVSEDQCEGRFVFGRQLPAPSKKAEKAKNVAGDGG DNSKNELQTLLARAGHESPAYKTKQLKNNQFRSTVFFNGLDFAGQPCSSKKLAEKDAAAAALLWLKGETHSYSRNTDHFSVLLKKSKTTNQNRIPVRGGK WN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	0	1
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	1.41	0.9256
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	2.00	0.9236
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	2.64	0.9445
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	4.89	0.9137
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.009G043100 [exp]	7.41	0.9027
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	7.74	0.9249
AT4G10070			KH domain-containing protein (...		Potri.013G099800 [exp]	8.12	0.8794
AT1G71240			Plant protein of unknown funct...		Potri.001G210200 [exp]	8.36	0.8939
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	9.48	0.9114
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.017G036400 [exp]	11.22	0.8898

Compare expression of checked genes

Potri.015G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.