Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18190 922 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 274 / 2e-85 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 232 / 3e-69 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT5G20890 231 / 3e-69 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 218 / 7e-64 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 214 / 2e-62 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 211 / 3e-61 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 152 / 4e-40 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 149 / 6e-39 TCP-1/cpn60 chaperonin family protein (.1) AT3G14270 54 / 3e-07 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051300 [exp] 967 / 0 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.010G051700 [exp] 279 / 3e-87 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 273 / 4e-85 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.001G341100 [exp] 250 / 3e-76 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 249 / 7e-76 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 248 / 2e-75 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.002G142700 [exp] 237 / 4e-71 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G195300 [exp] 233 / 1e-69 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G133800 [exp] 225 / 1e-66 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008670 [exp] 924 / 0 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10026151 [exp] 755 / 0 AT3G18190 740 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10011401 [exp] 273 / 8e-85 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 272 / 1e-84 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 271 / 4e-84 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037214 [exp] 248 / 2e-75 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10012380 [exp] 246 / 1e-74 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 243 / 1e-73 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032467 [exp] 243 / 3e-73 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032176 [exp] 242 / 4e-73 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.015G042600.1 pacid=42775748 polypeptide=Potri.015G042600.1.p locus=Potri.015G042600 ID=Potri.015G042600.1.v4.1 annot-version=v4.1 ATGGCACTTGTAGCAAAATCCGCTCCTCGATCTTCCAAAACCGAGTCGTACGTCGACAACAAGCGGAAAGAAGACATCCGCCATGCCAACATCAAGTCCG CTTGCGCGGTGGCTGACGCCGTCAGAACCAGTCTTGGTCCTAAAGGAATGGACAAAATGATTTCAACTGCGAGCGGCGAAGTCATCATTACCAATGACGG CGCCACCATTCTTAACAAGATGGAGGTTCTCCAACCGGCTGCGAAGATGCTTGTTGAACTCTCTAAATCTCAAGACACCGCTGCTGGTGACGGCACCACC ACCGTCGTTGTTATTGCCGGATCGTTGCTTAAGCAGTGCCTTTCACTCCTCTCCTCTGGTATCCACCCTACGGTAATCTCCGATTCATTACATAAAGCTT CAATTAAAGCTGTTGATGTTTTAACTGCAATGGCTGTGCCGTTAGAGTTAACGGACCGTGATTCGTTGGTGAAATCTGCTAGTACTTCATTAAATAGTAA AGTTGTTAGTCAGTATTCGTCGTTGCTAGCTCCATTAGCTGTTGATGCTGTTTTGACTGTTGTGGATCCTGAGAAGCCAGATTTAGTTGATCTTAGGGAT ATTAAGATAGTGAAAAAGCTGGGTGGAACCGTGGATGATACTGAGATGGTTAGGGGTTTCGTTTTTGATAAGAAAGTGAGTCATGCTGCAGGTGGGCTGA CGCGTGTTGAGAATGCCAAGATTGCGGTTATTCAGTTTCAGATTTCCCCGCCGAAGACTGATATTGAGCAGAGTATAGTGGTATCTGATTATGCACAAAT GGATAGGATTCTGAAGGAAGAGAGGAATTATATTTTGGGTATGATTAAGAAGATTAGGGCAACTGGGTGTAATGTGTTGCTGATTCAGAAGAGTATTTTG AGGGATGCGGTGACAGATTTGTCCTTGCATTATCTGGCGAAAGCGAAGATTTTGGTGATTAAGGATGTGGAGAGGGATGAGATTGAGTTCATTACTAAGA CTTTGAATTGTTTGCCCATTGCAAATATTGAGCATTTCAAAGAGGAAAAGTTGGGGTATGCGGATCTTGTTGAGGAGGTTTCACTTGGAGATGGGAAGAT TGTCAAGATTACTGGGATTAAGGATATGGGAAGGACTACCTGTGTGCTTGTACGTGGGTCCAATCAGTTAGTTCTCGATGAGGCAGAGCGGAGCTTGCAT GATGCCTTATGTGTCATTAGATGTTTGGTGAATAAACAGTTTTTGATTGCAGGAGGTGGGGCACCAGAGATTGAATTGTCAAGACAGCTTGGAGCATGGG CCAAGGTGCTGCATGGGATGGAAGGATACTGTGTGAAGTCATTTGCTGAGGCACTTGAGGTTATACCATATACTTTGGCAGAGAATGCAGGGTTGAATCC TATTACTATTGTGACTGAACTGAGGAATAGGCATGCTCAAGGAGAGATCAATGCAGGAATCAATGTGAGGAAGGGGCAGATCACAAATATTTTGGAGGAG AATGTGGTTCAGCCTCTGCTTGTGAGCACAAGTTCCATCACACTGGCAGCAGAGTGTGTGCGGATGATTTTGAAGATTGATGACATTGTTACTGTCAGGT AG
AA sequence Show only first row Show all	>Potri.015G042600.1 pacid=42775748 polypeptide=Potri.015G042600.1.p locus=Potri.015G042600 ID=Potri.015G042600.1.v4.1 annot-version=v4.1 MALVAKSAPRSSKTESYVDNKRKEDIRHANIKSACAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDTAAGDGTT TVVVIAGSLLKQCLSLLSSGIHPTVISDSLHKASIKAVDVLTAMAVPLELTDRDSLVKSASTSLNSKVVSQYSSLLAPLAVDAVLTVVDPEKPDLVDLRD IKIVKKLGGTVDDTEMVRGFVFDKKVSHAAGGLTRVENAKIAVIQFQISPPKTDIEQSIVVSDYAQMDRILKEERNYILGMIKKIRATGCNVLLIQKSIL RDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFKEEKLGYADLVEEVSLGDGKIVKITGIKDMGRTTCVLVRGSNQLVLDEAERSLH DALCVIRCLVNKQFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVKSFAEALEVIPYTLAENAGLNPITIVTELRNRHAQGEINAGINVRKGQITNILEE NVVQPLLVSTSSITLAAECVRMILKIDDIVTVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.015G042600 [exp]	0	1
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G051500 [exp]	5.91	0.8295
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	6.92	0.7955
AT5G42150			Glutathione S-transferase fami...		Potri.015G038300 [exp]	9.05	0.8127
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.013G058500 [exp]	14.69	0.8003
AT5G05520			Outer membrane OMP85 family pr...		Potri.008G071800 [exp]	14.73	0.7657
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.004G101500 [exp]	14.83	0.8061
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Potri.004G094400 [exp]	16.12	0.6866
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.012G110700 [exp]	16.85	0.6825
AT1G14060			GCK domain-containing protein ...		Potri.019G081400 [exp]	18.33	0.7915
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Potri.006G190600 [exp]	19.41	0.7871

Compare expression of checked genes

Potri.015G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.