Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37900 794 / 0 Protein of unknown function (duplicated DUF1399) (.1) AT2G22660 787 / 0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) AT1G56230 117 / 5e-27 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) AT4G37682 61 / 2e-11 Protein of unknown function (DUF1399) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108900 [exp] 736 / 0 AT2G22660 696 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Potri.013G013000 [exp] 131 / 3e-31 AT1G56230 777 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019239 [exp] 857 / 0 AT2G22660 747 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Lus10004273 [exp] 778 / 0 AT2G22660 679 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Lus10020675 [exp] 110 / 1e-24 AT1G56230 747 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) Lus10029871 [exp] 107 / 2e-23 AT1G56230 771 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07173 [poplar] [flax] GRDP-like Glycine-rich domain-containing protein-like
Representative CDS sequence Show only first row Show all	>Potri.015G042800.9 pacid=42776332 polypeptide=Potri.015G042800.9.p locus=Potri.015G042800 ID=Potri.015G042800.9.v4.1 annot-version=v4.1 ATGGGGATGGAGAGGGAGAAAGAACAAGAGTTTGAGTGGCTTAAAGCTCAAAAGATTGAGATAACTGTGGATCTTTTGGCTGCAGCAAAACAGCAACTTC AGTTTCTTGCTGCTGTTGATAAGAATCGTTGGCTTTATGATGGTCCTACCCTTGACAGGGCTATTTTCCGGTACAATGCTTGCTGGCTTCCCTTGCTTGC AAAACATTTGGAGTCGCCAATTTCTGAAGGACCATTGGTGGTGCCTCTTGATTGTGAATGGATTTGGCATTGTCACCGGCTCAATCCACTACGGTACAAA TCTGACTGTGAAGAACTTTATGGAAAGATCCTCGATTACTCTGATGTTGTATCTTCTGTCAATGGAGTTTGTAAAAGGCAAACTGAAGAAATTTGGAATA GATTCTATCCACATGAGCGTTATGACTTCGATTTGGCTTTCTCAGAAGCTGTCAATGAAAAAATTTCAACCCTTGAGAAATGTACGAACTATGATTTGGT GTCGGCAGTTAAAAGGCAGAGCCCTTTCTTTTATCAGGTTTCCAGACCCCATATGAACAATGATATTTTCCTTCAAGGAGCTATAGCCAGATATAAAGGG TTTTTGCATATTATCAAGAGGAACTGGGAAAAGTCCATAAATTGCTTTTGTGTTCCAACTTACGACATTGATCTTATCTGGCACACACACCAGTTGCATC CTGTTTCTTACTGTAAAGATGTGAGTCAAGCACTTGGCAGGATATTGGCGCATGATGACATGGACTCTGACAGGTCTAAAGGGAAGAAGCTGGATGTTGG ATTTTCTGGAACCACCAGGCATTGGGAAGAGACATTTGGCAGAAGGTATTGGAAGGCAGGTGCAATGTATAGAGGCAGTGATCCATCTCCTCTCACAACC ATTCCGTTCCAATCAAATATCTTGAGCAAAGAGTTAGAAAAATCAAATCAAAACAAGAAGATGATTGAACTTTCAGAGCAGAAGATTGTTGAGGTCCTTT TGGAGATTGTGGGAGTCAAAAACTTACCAGAGAGGCACAAGGGAAACCTCTTTGTGATGTTTAATAAAAAGCAACCTGATGTATTCTATAATGTTAAGCG GAAACTTACTATCCTGTCAGAATCAGGAGACAAACATGTTGCTTCTTTCCAATGTGAACCTAAGGGAGAGCTTTTCTTTGAACTTGTATCATATTCACCT TCCAACTTACCACTAACCAAGGTGTGTAAAACAATGGGCACTACCTCATTCTCCCTGGAAGACTTTCTGAATCCAGTGTCTGAACTTTCTGTGGAAAGAT GGGTGGAATTGCAGCCTACTTCTGGAAATATGATCTCAAAGCCAATCTGCCTCCGAATCGCTGTCTCATTTAGTGTTCCCATCCAAGCACCATATGAACT GCACATGATTCGTTCCCGAGCACAGTCAAAAAGTTCTTGCTTCTTCCCACTTCCTGGAAGGGCACAACATCCTAATATCTGGACTTCTGTAGTTGAGAAA ACTGATGCTGAGATTATTAGCCTACAAATGAGGAACTCAACAAAGGCAAAGGAGAAAGAAAGAAGCATTCTTAAGCAGCAAGTAACTGGTGTTATGAAGA CTGGTGAAACGTGTATTCTTGCAGAGTTTGTGGGGACTCGGTGGTGTTTGATGGATTCTCAGTGGTACCTTGAGCCAAAAAAGAAATCCAATGAAGATGG TCATCTCTTTGAGCTCATAGGCTGTCGGATGGTAAAACTTTTCCAGGGAAAAAAGCTTGATTTTGAGCCTAAACATTGCGAGAAGAAGAGAAGTAAACAA GATTTTATGACTGCAGTTGAATTTTCTGCTGAGTATCCATATGGAAAAGCTGTGGCATTGCTTGATTTAAAGTCTGGATTTGTCAAGGTAAAGGAATCAT GGTTGGTGTTACCTGCAATCATATCAGCCTTCATACTTTCTGATATTTTGAAGAAGGAAGGATATAATGGCTTCACTTCTAACAGAGAAAATCTGGAGGT AGATAGTTTAGTGGAAAAGGCCAAAGGCTTTCATGAGGAACCTGAGCAAATCAGCCTGACTGCTGCTTCAGAAGGTAACATGGAGCTGAATGTGGACGTG GCTAAAGGAAGCATAGTGAGGAGTGGAAATTGTGGTGGCGGTTGTGGCGGTTGTGGCAGTGGATGCGGGGACATGGTGAGGAGTGGAAACTGTGGTGGTG GTTGTGGTGGTTGTGGCAGTGGATGCGGGGACATGGTGAGTGGAAACTCTGGTGACAGTGGGTGTGGTGACACAATGAAGAGTGGAAATAGTGGTGGTTG TGGTGGATGTGGCGGTGGATGTGGCGGTGGATGTGGCAACATGGTGAGGAGTGGAAACTCTGGTGACAGTGGGTGTGGTGACACAATGAAGAGTGGAAAT AGTGGTGGTTGTGGGGGTTGTGGTGGATGTGGTGGTTGTGGCGGTGGATGTGGCAACATGGTGAGGAGTGGAAACTGA
AA sequence Show only first row Show all	>Potri.015G042800.9 pacid=42776332 polypeptide=Potri.015G042800.9.p locus=Potri.015G042800 ID=Potri.015G042800.9.v4.1 annot-version=v4.1 MGMEREKEQEFEWLKAQKIEITVDLLAAAKQQLQFLAAVDKNRWLYDGPTLDRAIFRYNACWLPLLAKHLESPISEGPLVVPLDCEWIWHCHRLNPLRYK SDCEELYGKILDYSDVVSSVNGVCKRQTEEIWNRFYPHERYDFDLAFSEAVNEKISTLEKCTNYDLVSAVKRQSPFFYQVSRPHMNNDIFLQGAIARYKG FLHIIKRNWEKSINCFCVPTYDIDLIWHTHQLHPVSYCKDVSQALGRILAHDDMDSDRSKGKKLDVGFSGTTRHWEETFGRRYWKAGAMYRGSDPSPLTT IPFQSNILSKELEKSNQNKKMIELSEQKIVEVLLEIVGVKNLPERHKGNLFVMFNKKQPDVFYNVKRKLTILSESGDKHVASFQCEPKGELFFELVSYSP SNLPLTKVCKTMGTTSFSLEDFLNPVSELSVERWVELQPTSGNMISKPICLRIAVSFSVPIQAPYELHMIRSRAQSKSSCFFPLPGRAQHPNIWTSVVEK TDAEIISLQMRNSTKAKEKERSILKQQVTGVMKTGETCILAEFVGTRWCLMDSQWYLEPKKKSNEDGHLFELIGCRMVKLFQGKKLDFEPKHCEKKRSKQ DFMTAVEFSAEYPYGKAVALLDLKSGFVKVKESWLVLPAIISAFILSDILKKEGYNGFTSNRENLEVDSLVEKAKGFHEEPEQISLTAASEGNMELNVDV AKGSIVRSGNCGGGCGGCGSGCGDMVRSGNCGGGCGGCGSGCGDMVSGNSGDSGCGDTMKSGNSGGCGGCGGGCGGGCGNMVRSGNSGDSGCGDTMKSGN SGGCGGCGGCGGCGGGCGNMVRSGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37900			Protein of unknown function (d...		Potri.015G042800 [exp]	0	1
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G108500 [exp]	1.73	0.7242
AT5G20650		COPT5	copper transporter 5 (.1)		Potri.006G219200 [exp]	3.46	0.6489
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G028300 [exp]	8.48	0.6718
					Potri.010G112101 [exp]	18.24	0.5650
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.014G035800 [exp]	19.10	0.6613	PDE135.1
AT1G20180			Protein of unknown function (D...		Potri.005G193000 [exp]	19.44	0.6776
AT4G18425			Protein of unknown function (D...		Potri.004G049000 [exp]	21.16	0.6389
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G018805 [exp]	21.44	0.6158
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.010G113700 [exp]	21.84	0.6272
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Potri.013G130400 [exp]	23.15	0.6289

Compare expression of checked genes

Potri.015G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.