Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18200 475 / 8e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 414 / 2e-144 WAT1 Walls Are Thin 1 (.1.2) AT3G53210 334 / 2e-113 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 227 / 3e-71 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 224 / 4e-70 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 216 / 7e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 215 / 7e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 210 / 1e-64 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 210 / 2e-64 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 209 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233600 [exp] 418 / 4e-146 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 416 / 3e-145 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.007G017800 [exp] 350 / 1e-119 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.008G165600 [exp] 234 / 4e-74 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 233 / 1e-73 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 229 / 6e-72 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 229 / 7e-72 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 228 / 9e-72 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 227 / 3e-71 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038959 [exp] 507 / 0 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 502 / 9e-179 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 388 / 2e-133 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 328 / 7e-111 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10041801 [exp] 284 / 2e-94 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10028351 [exp] 272 / 3e-90 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10035693 [exp] 233 / 4e-73 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10008706 [exp] 231 / 2e-72 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10037284 [exp] 228 / 2e-72 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10041634 [exp] 229 / 1e-71 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.015G042900.1 pacid=42774758 polypeptide=Potri.015G042900.1.p locus=Potri.015G042900 ID=Potri.015G042900.1.v4.1 annot-version=v4.1 ATGGCAGATAGGAGTGTTCTCCCTCAGAAAATGAAACTTCTTCTGGCCTTAGTTGCTCTACAGTTTTGCTATTCAGGGTTTCATATTGTTTCAAGGGTAG CACTAAACATTGGTGTTAGCAAAGTTGTTTACCCAGTTTATAGGAACATCATTGCATTGCTTTTATTGGGACCTTTCGCTTATTTCTTTGAGAAGAAGGA AAGACCACCTCTTACTTTCTCTGTGCTGGTTCAACTCTTCTTTCTAGCATTATTGGGAATCACTGCAAACCAAGGGTTTTATCTCTTGGGATTGTATTAT GCATCTCCAGCTTTTGCTTCAGCAATGCAAAATTCAGTTCCTGCAATCACTTTTGTCATGGCTTCTGCTCTAGGACTTGAGAAAGTCAACATTTCTAGGA GAGATGGACTAGCAAAAGTTTTAGGAACCATTGCAAGTATAGGGGGTGCGTCTGTCATTACACTCTACAAAGGCCCTCCTCTACTGCATCAGATAACACA ACAAGAACAAGGAATAACATCTGAAGAAGATATGTCTTCAAAGAAAATGCAAAACTGGACATGGGGATGCATATTCCTGTTTGGGCACTGCTTATCATGG GCTGGCTGGATGGTCTTTCAGGCTCCTGTGTTGAAGAAGTATCCGGCAAAGCTCTCTGTCACTTCTTTTACATGCCTTTTTGGATTGATCCAGTTCTTGG TCATTGCAGCATTTGTAGAAACTGACGTCAACCATTGGAAAATCCAATCAGGAGAAGAACTATTCACAATCCTATATGCTGGGATTGTGTCCTCTGCTAT AGTCATTTCCCTTCAAACATGGTGCATTCACAAAGGTGGTCCTGTCTTTGTTGCTGTCTTTCAACCAATGCAGACAATTTTGGTTGCTATTATGGCTTCT CTAATACTTGGTGATCAGTTGTACTCTGGAGGGATTATTGGTGCAATTCTTATCATGCTTGGTCTCTATTCTGTTTTATGGGGCAAAATTGAAGAGAAAA GAGTGGAAATTCAAAACAGGGAAGAGACCCTGACAAGGAACCTTCTTGAAGACAAAAATAAAGACAAAGAAGAGGGGCCTTGTATTGTCTGA
AA sequence Show only first row Show all	>Potri.015G042900.1 pacid=42774758 polypeptide=Potri.015G042900.1.p locus=Potri.015G042900 ID=Potri.015G042900.1.v4.1 annot-version=v4.1 MADRSVLPQKMKLLLALVALQFCYSGFHIVSRVALNIGVSKVVYPVYRNIIALLLLGPFAYFFEKKERPPLTFSVLVQLFFLALLGITANQGFYLLGLYY ASPAFASAMQNSVPAITFVMASALGLEKVNISRRDGLAKVLGTIASIGGASVITLYKGPPLLHQITQQEQGITSEEDMSSKKMQNWTWGCIFLFGHCLSW AGWMVFQAPVLKKYPAKLSVTSFTCLFGLIQFLVIAAFVETDVNHWKIQSGEELFTILYAGIVSSAIVISLQTWCIHKGGPVFVAVFQPMQTILVAIMAS LILGDQLYSGGIIGAILIMLGLYSVLWGKIEEKRVEIQNREETLTRNLLEDKNKDKEEGPCIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18200			nodulin MtN21 /EamA-like trans...		Potri.015G042900 [exp]	0	1
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Potri.014G122200 [exp]	3.31	0.9291
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G056000 [exp]	3.87	0.9187	Pt-GNS2.1
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.001G269800 [exp]	5.91	0.9089
AT5G49130			MATE efflux family protein (.1...		Potri.010G011400 [exp]	6.78	0.8813
AT4G13710			Pectin lyase-like superfamily ...		Potri.003G175900 [exp]	7.74	0.9193
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.001G204100 [exp]	8.00	0.9068
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123600 [exp]	8.48	0.8956
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G001000 [exp]	10.09	0.9122
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.005G139700 [exp]	10.95	0.9026
AT5G66330			Leucine-rich repeat (LRR) fami...		Potri.007G016800 [exp]	11.22	0.8842

Compare expression of checked genes

Potri.015G042900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.