Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18030 438 / 1e-154 Protein phosphatase 2C family protein (.1.2) AT5G10740 136 / 6e-37 Protein phosphatase 2C family protein (.1) AT2G25620 134 / 6e-36 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT5G24940 134 / 2e-35 Protein phosphatase 2C family protein (.1) AT4G31750 127 / 5e-34 WIN2 HOPW1-1-interacting 2 (.1) AT1G43900 128 / 8e-34 Protein phosphatase 2C family protein (.1) AT5G53140 122 / 2e-31 Protein phosphatase 2C family protein (.1) AT3G51470 121 / 3e-31 Protein phosphatase 2C family protein (.1) AT2G33700 116 / 2e-29 Protein phosphatase 2C family protein (.1) AT2G25070 114 / 1e-28 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267600 [exp] 130 / 2e-35 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 128 / 2e-34 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 127 / 5e-34 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.005G186001 [exp] 124 / 4e-33 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 120 / 8e-31 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 117 / 4e-30 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 117 / 1e-29 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 115 / 5e-29 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.012G002100 [exp] 115 / 6e-29 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009642 [exp] 467 / 6e-166 AT1G18030 469 / 1e-166 Protein phosphatase 2C family protein (.1.2) Lus10026908 [exp] 127 / 5e-34 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 127 / 7e-34 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 123 / 9e-33 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 123 / 9e-33 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 121 / 3e-31 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10013124 [exp] 121 / 3e-31 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10014926 [exp] 120 / 3e-31 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 121 / 4e-31 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013213 [exp] 119 / 3e-30 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.015G043000.2 pacid=42775714 polypeptide=Potri.015G043000.2.p locus=Potri.015G043000 ID=Potri.015G043000.2.v4.1 annot-version=v4.1 ATGAGCGAAGGAAGCACAAATCCAGTCACTGAAACAGAGACCTCAAATCTGAAGCGCGAGAACCCAATCATCATCGAGGAATTAAATTCAGAGTCAAAGA AACAAAAAACTGAAGCTGAAGTATTGACGAGTGAAGAAAGCAAGCGAAACGACAGTGGAACAGAAGAGAAGAAGCAGAAACAGCAACAGATTGCGGCGGA GAAGGAGTTTAAGATCGAAGCCAATGCGGCGGAGGATAAAGGATCGAGACACTCCATGGAGGATGCTTGGGTTGTGTTACTAGACGCTAGCTTGGACTCT CCTCCTGGAAAATTGAGATGCGCACATTTTGCAATATATGATGGACATGGAGGGAGGTTAGCAGCTGAGTATGCTCAGAAGAATTTACATAAAAACGTTG TCTCTTCTGGCTTACCACGTGAGTTGTTGGATGTGAAAGCTGCCAAAAAGGCCATTCTTGATGGTTTTCGGAAAACTGATGAGTCTCTCCTTCAAGAAAG TACTTCAGGAGGATGGCAGGATGGTGCTACGGCTGTATGTGTATGGGTATTGGGACAAAAAGTTTTCATTGCTAACATAGGGGATGCAAAAGCAGTTTTA GCCCGATCATCCATTATTGATGGATCACAGAATCACCCAGATGGAGTAAGTCCATTGAAGGCTATTGTTTTGACAAGGGAACACAAAGCCATATATCCAC AGGAACGTGCTCGAATACAAAAGGCTGGTGGAAGTGTGAGTTCAAATGGACGATTACAAGGTCGCCTTGAGGTTTCTAGGGCTTTTGGAGACCGCCAATT CAAGAAGGTAGGTGTTGTGGCAACCCCAGATATTCATTCCTTTGACCTCACAGACAGAGAGCACTTTATTATTCTTGGTTGTGATGGCCTATGGGGGGTA TTTGGACCAAGTGATGCTGTTGAATTTGTTCAGAAATTATTGAAGGAAGGTTTGACTGTTGCAGCTGTGAGCCGCCGTCTTGTAAGGGAAGCTGTTCTTG AGCGGCGCTGCAAAGATAATTGCACTGCAATCATCATTGTTTTCAAGCACGGTTAA
AA sequence Show only first row Show all	>Potri.015G043000.2 pacid=42775714 polypeptide=Potri.015G043000.2.p locus=Potri.015G043000 ID=Potri.015G043000.2.v4.1 annot-version=v4.1 MSEGSTNPVTETETSNLKRENPIIIEELNSESKKQKTEAEVLTSEESKRNDSGTEEKKQKQQQIAAEKEFKIEANAAEDKGSRHSMEDAWVVLLDASLDS PPGKLRCAHFAIYDGHGGRLAAEYAQKNLHKNVVSSGLPRELLDVKAAKKAILDGFRKTDESLLQESTSGGWQDGATAVCVWVLGQKVFIANIGDAKAVL ARSSIIDGSQNHPDGVSPLKAIVLTREHKAIYPQERARIQKAGGSVSSNGRLQGRLEVSRAFGDRQFKKVGVVATPDIHSFDLTDREHFIILGCDGLWGV FGPSDAVEFVQKLLKEGLTVAAVSRRLVREAVLERRCKDNCTAIIIVFKHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18030			Protein phosphatase 2C family ...		Potri.015G043000 [exp]	0	1
AT5G10070			RNase L inhibitor protein-rela...		Potri.005G080300 [exp]	2.82	0.7634
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Potri.015G090500 [exp]	13.11	0.7500	HAG905
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.009G090200 [exp]	13.67	0.7795
AT3G49080			Ribosomal protein S5 domain 2-...		Potri.012G144700 [exp]	20.49	0.7356
AT1G50000			methyltransferases (.1.2)		Potri.001G290100 [exp]	23.45	0.7197
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	27.05	0.7380
AT1G30960			GTP-binding family protein (.1...		Potri.001G160800 [exp]	28.14	0.7177	Pt-ERG.1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.002G220300 [exp]	29.93	0.7150
AT3G52905			Polynucleotidyl transferase, r...		Potri.001G104800 [exp]	33.40	0.7311
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.006G043232 [exp]	39.68	0.6507

Compare expression of checked genes

Potri.015G043000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.