Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18210 555 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G22950 477 / 7e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G48740 387 / 5e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43660 380 / 1e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G48700 350 / 2e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G47940 96 / 2e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051200 [exp] 717 / 0 AT3G18210 531 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G125800 [exp] 541 / 0 AT3G18210 452 / 3e-159 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G117951 [exp] 42 / 5e-05 AT1G22950 43 / 9e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031064 [exp] 464 / 1e-163 AT3G18210 433 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10035445 [exp] 385 / 8e-126 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000171 [exp] 193 / 2e-60 AT1G22950 171 / 3e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G043100.2 pacid=42775690 polypeptide=Potri.015G043100.2.p locus=Potri.015G043100 ID=Potri.015G043100.2.v4.1 annot-version=v4.1 ATGTCGGGGGATCGCCGGGAATCACCTCCGGTGATCGGAGGAGGAAACGGTGTGGTTGAACCGGAGAAAAAACCAGCTCCAGTGATTGTGCCGAGTCAGA GGCTGAGACTACACGCTAACAAGGATCACATGCCGGAGAGCTATGAAGATCTGCAACTGGATTTTTGTCCTTCGATTTTTAGCTCGCTGGAGAAATACTT GCCGCCGAATATGCTTCATGATAGTAGAGAAGAGAAAGTGAAGTTCATGAGAGATATTCTATTAAAGTATTTGCCACATGGAGAGCGAACCAGAGCTCAG AAACATAGAGAATACAGGCAGAAGATAATATCGCATTATAAGCCTTTGAAAAGAGAGTTATACACAATGCACCCTGTTACTTTCTTTGTCCCCTCCTTCA TGAAAGCAATCAATGATAATACAGAGGACAGTCTTAGAAGCATAATATCAGAACCCTCTCCTGGTGTGCTCACATTTGAGATGCTTCAGCCACGCTTTTG TGAATTGCTAGTAGCAGAGGTTGAAAATTTTGAGGCATGGGTTAATGATACAAAATTTCGAATCATGCGACCAAATACGATGAATAAATACGGAGCTGTT CTGGATGATTTTGGCCTTGAAACAATGCTTGACAAGCTTATGGATGGTTTTATCCGTCCTATATCTAAAGTTTTTTTTCCTGATGTTGGTGGGGCAACTC TGGATTCTCATCATGGTTTTGTTGTTGAATATGGCAAAGATTGGGATGTTGACTTAGGCTTTCATGTGGATGACTCTGAAGTAACTTTGAATGTTTGCTT GGGTAAGCAATTTTCTGGCGGAGAATTGTTTTTCCGGGGCACAAGGTGTGATAAACATGTAAATACAGGAAGTCAGCCAGAGGAAATATTTGATTACTCT CATATTCCTGGACGAGCTGTGCTTCATCTTGGTCGTCATAGGCATGGTGCTAGGGCCACAACATCTGGTCATAGGATCAATTTACTCCTGTGGTGCAGAA GTTCAGTCTTCAGAGAGATGAAGAAATATCAAAAAGATTTCTCGAATTGGTGTGGAGAGTGCTCACGAGAGAAGAAAGAAAGGCAACGGGCATCCATTGC TGCTACTAAATCGGAGTTGCTAAGGAAGGATGGTGAATCCGTAGTGTAA
AA sequence Show only first row Show all	>Potri.015G043100.2 pacid=42775690 polypeptide=Potri.015G043100.2.p locus=Potri.015G043100 ID=Potri.015G043100.2.v4.1 annot-version=v4.1 MSGDRRESPPVIGGGNGVVEPEKKPAPVIVPSQRLRLHANKDHMPESYEDLQLDFCPSIFSSLEKYLPPNMLHDSREEKVKFMRDILLKYLPHGERTRAQ KHREYRQKIISHYKPLKRELYTMHPVTFFVPSFMKAINDNTEDSLRSIISEPSPGVLTFEMLQPRFCELLVAEVENFEAWVNDTKFRIMRPNTMNKYGAV LDDFGLETMLDKLMDGFIRPISKVFFPDVGGATLDSHHGFVVEYGKDWDVDLGFHVDDSEVTLNVCLGKQFSGGELFFRGTRCDKHVNTGSQPEEIFDYS HIPGRAVLHLGRHRHGARATTSGHRINLLLWCRSSVFREMKKYQKDFSNWCGECSREKKERQRASIAATKSELLRKDGESVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.015G043100 [exp]	0	1
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.008G127400 [exp]	1.41	0.7451
AT2G36350			Protein kinase superfamily pro...		Potri.004G186300 [exp]	2.82	0.8027
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Potri.016G095900 [exp]	19.18	0.7052
AT2G31130			unknown protein		Potri.019G089900 [exp]	22.44	0.7091
AT4G39870			TLD-domain containing nucleola...		Potri.005G075800 [exp]	23.91	0.7027
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Potri.014G075800 [exp]	24.33	0.6967
AT5G63690			Nucleic acid-binding, OB-fold-...		Potri.014G083500 [exp]	36.33	0.6750
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.007G068400 [exp]	36.74	0.6724
AT5G66240			Transducin/WD40 repeat-like su...		Potri.005G114600 [exp]	38.15	0.6484
AT1G27070			5'-AMP-activated protein kinas...		Potri.008G194300 [exp]	42.89	0.6867

Compare expression of checked genes

Potri.015G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.