Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17980 870 / 0 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT2G25850 706 / 0 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT4G32850 703 / 0 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT3G06560 283 / 1e-86 PAPS3 poly(A) polymerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235400 [exp] 737 / 0 AT4G32850 909 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Potri.018G057200 [exp] 734 / 0 AT2G25850 920 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Potri.008G102500 [exp] 297 / 6e-92 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1) Potri.001G400800 [exp] 44 / 0.0004 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021643 [exp] 1015 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10034723 [exp] 998 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009011 [exp] 959 / 0 AT1G17980 857 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009641 [exp] 900 / 0 AT1G17980 800 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10006029 [exp] 745 / 0 AT4G32850 911 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10006844 [exp] 693 / 0 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10037589 [exp] 690 / 0 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10005490 [exp] 632 / 0 AT4G32850 769 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01909 [poplar] [flax] NTP_transf_2 Nucleotidyltransferase domain CL0260 [poplar] [flax] PF04926 [poplar] [flax] PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain CL0260 [poplar] [flax] PF04928 [poplar] [flax] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Potri.015G043200.2 pacid=42775740 polypeptide=Potri.015G043200.2.p locus=Potri.015G043200 ID=Potri.015G043200.2.v4.1 annot-version=v4.1 ATGGGGAGCCCAGGTTTAATCAATCGAAATAACGGGCAGCAGCAGCAGCAGAGACTAGGCATTACAGAACCAATTTCATTGGGTGGACCAACAGAGTACG ATGTGACAAAGACCCGTGAACTCGAAAAGTTTTTGCAAGATGCGGGATTGTATGAAAGTCAGGAGGAAGCTGTGAGTAGAGAGGAAGTACTTGGGAGACT TGACCAGATTGTGAAGAATTGGGTTAAAGTAATTAGCCGTGCTAAACGGTTGAATGAGCAACTGGTGCAAGAAGCAAATGCTAAGATTTTCACATTTGGT TCTTACCGCCTAGGGGTGCATGGCCCTGGTGCAGATATAGATACTCTTTGCGTGGGACCTAGACATGCAACAAGAGAAGAAGATTTTTTTGGTGAGTTAC ATAGAATGTTGTCAGAGATGCCTGAAGTAACAGAGTTGCACCCTGTGCCTGATGCTCATGTTCCAGTGATGAGATTCAAATTTAAGGGTGTTTCTATTGA TCTTCTTTATGCTAAACTGTCACTTTGGGTTATTCCTGAAGATTTAGATGTTTCACAAGACTCGATGCTGCATAATGCAGATGAACAGACTGTTCGAAGT CTCAATGGTTGCCGAGTTACTGACCAGATTTTACGTTTGGTGCCAAATATTCAGAATTTCCGCACAACATTGCGATGCATGAGGTTTTGGGCAAAGCGTC GTGGTGTATATTCAAATGTTTCAGGGTTTCTTGGTGGTATAAATTGGGCGTTGCTTGTTGCTCGCATATGCCAGCTATTTCCAAATGCACTCCCAAATAT GTTAGTGTCTCGGTTCTTCAGGGTGTACACTCAGTGGCGTTGGCCAAACCCAGTTATGCTATGCGCTATCGAAGAAGGATCCCTTGGTCTTTCTGTTTGG GATCCTAGAAGAAATCCAAAGGACAGATATCATTTGATGCCTATAATTACTCCTGCTTATCCTTCAATGAATTCTAGCTACAATGTATCTTCGAGCACAC TGCGTATAATGACAGAAGAGTTTCAGAGAGGAAATGAAATTTGTGAGGCTATGGAGGTGAGCAAGGCAGAATGGGACACCCTTTTTGAGCCATTTTCATT CTTTGAAGCATATAAGAATTATCTACAGATAGACATCAGTGCTGAAAATGAAGATGATTTAAGACAGTGGAAGGGATGGGTTGAATCCCGTCTCCGTCAA CTTACCCTGAAGATTGAGAGGCACACTTACAACATGCTCCAATGTCACCCCCACCCAGGCGAGTTTTCAGACAAATCTAGACCTTTACATTGCTCTTACT TTATGGGCTTGCAACGTAAACAAGGAGTTCCTGTAAATGAAGGTGAACAGTTTGATATAAGGATAACTGTTGATGAATTCAAAAACTCTGTCAACATGTA CACATTATGGAAGCCTGGGATGGAGATCCGTGTAACTCATGTAAAAAAGAGGAACATACCGAATTTTGTTTTTCCAAGTGGGGTTCGTCCTTCTCGTCCA TCAAAGGCAACTTGGGATGGTAGGCGGAGTTCAGAAGCCAAGGTTGCTAATAATTCTTCAGCAGATAAGATTGAAGGCAAAGGAGTTCTTGATGGATCAG ATGAGGGAAAGAAGAGAAAGCGAATTGATGAGGATACAGAAAATAACTTGAGAAATCCCAAGGGCTATGCTGCCATGCCTCCCTCCGGTGGGGAAGTTCA TGAGGGCAGTCCTCCTGTTGGTAATGTCAGTTCCTGCTCTACACAAAGTGACCTTGTAATTACAAACAGTTTAGGGGAATTGAAGGGGGAGAAAGCTGAC AACAATGAAACAGAAAGCTTAAGTAATTCACAAAATTTAGCAGGGATTTTTGCTCAAAATGGTGAGCTTGATGGAATATTGAGATGTAACCTTCCGGACA AAGGTTTGCCAGCTAACAATGATACTTCAAGTTCTAAAGAGGCTGAGAAGCTGGCAATTGATAAAATAATGTCTGGTCCTTATGTTGCCCACCAAGCTTT ACCACAAGAACTCGATGAGCTCGAAGATGACTTTGTATATACAAATCAGGGAAAGGGTTCAGAGTGGGCTGCAAAAGGCAGCCCAGTGGAATCTTCATTG TCAAATACAGCAGTAGAACAAACAAATGAATCTATAGCAGCAGTTGCATGCAGCAATGGAGCTGGTCCATCTGCTTATTTGTACCCTAATGGTGGCTCGG AGGAGCTTGAGCCTGCTGAACTTATGGCACCATTGTTCAACGGAATCTCTTCAGCTCCACCTGTGGCACAACCGAAACCACTTATCAGGTTGAACTTTAC TTCCTTGGGCAAAGCTGCTGGCAAAAGCACATGA
AA sequence Show only first row Show all	>Potri.015G043200.2 pacid=42775740 polypeptide=Potri.015G043200.2.p locus=Potri.015G043200 ID=Potri.015G043200.2.v4.1 annot-version=v4.1 MGSPGLINRNNGQQQQQRLGITEPISLGGPTEYDVTKTRELEKFLQDAGLYESQEEAVSREEVLGRLDQIVKNWVKVISRAKRLNEQLVQEANAKIFTFG SYRLGVHGPGADIDTLCVGPRHATREEDFFGELHRMLSEMPEVTELHPVPDAHVPVMRFKFKGVSIDLLYAKLSLWVIPEDLDVSQDSMLHNADEQTVRS LNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLFPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLSVW DPRRNPKDRYHLMPIITPAYPSMNSSYNVSSSTLRIMTEEFQRGNEICEAMEVSKAEWDTLFEPFSFFEAYKNYLQIDISAENEDDLRQWKGWVESRLRQ LTLKIERHTYNMLQCHPHPGEFSDKSRPLHCSYFMGLQRKQGVPVNEGEQFDIRITVDEFKNSVNMYTLWKPGMEIRVTHVKKRNIPNFVFPSGVRPSRP SKATWDGRRSSEAKVANNSSADKIEGKGVLDGSDEGKKRKRIDEDTENNLRNPKGYAAMPPSGGEVHEGSPPVGNVSSCSTQSDLVITNSLGELKGEKAD NNETESLSNSQNLAGIFAQNGELDGILRCNLPDKGLPANNDTSSSKEAEKLAIDKIMSGPYVAHQALPQELDELEDDFVYTNQGKGSEWAAKGSPVESSL SNTAVEQTNESIAAVACSNGAGPSAYLYPNGGSEELEPAELMAPLFNGISSAPPVAQPKPLIRLNFTSLGKAAGKST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Potri.015G043200 [exp]	0	1
AT5G12230		MED19A	unknown protein		Potri.009G156200 [exp]	1.41	0.8067
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	1.73	0.8406
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Potri.005G047600 [exp]	4.24	0.7634	Pt-EDR1.1
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	7.14	0.7957	Pt-TOP1.2
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	7.48	0.7578
AT5G12400			DNA binding;zinc ion binding;D...		Potri.009G049100 [exp]	16.12	0.7665
					Potri.018G126925 [exp]	16.88	0.7263
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.005G182100 [exp]	17.20	0.7811
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.001G193900 [exp]	17.23	0.7474
AT4G32620			Enhancer of polycomb-like tran...		Potri.006G246200 [exp]	20.59	0.7535

Compare expression of checked genes

Potri.015G043200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.