Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 533 / 8e-176 transmembrane receptors;ATP binding (.1.2) AT1G27180 481 / 1e-154 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 367 / 3e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 319 / 3e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 264 / 3e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 259 / 3e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 256 / 2e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 254 / 1e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 254 / 1e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G19510 253 / 3e-73 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043600 [exp] 1034 / 0 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.012G053200 [exp] 869 / 0 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G001602 [exp] 426 / 3e-137 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 419 / 9e-135 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 398 / 3e-128 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 382 / 2e-125 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 394 / 6e-125 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 392 / 7e-125 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 393 / 2e-124 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 365 / 1e-113 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10014207 [exp] 357 / 9e-111 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 350 / 3e-107 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 347 / 4e-107 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004911 [exp] 345 / 5e-106 AT1G27170 387 / 5e-115 transmembrane receptors;ATP binding (.1.2) Lus10007790 [exp] 343 / 4e-105 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 342 / 9e-105 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 341 / 1e-104 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 338 / 1e-103 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10026961 [exp] 337 / 1e-103 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05729 [poplar] [flax] NACHT NACHT domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.015G043501.1 pacid=42774997 polypeptide=Potri.015G043501.1.p locus=Potri.015G043501 ID=Potri.015G043501.1.v4.1 annot-version=v4.1 ATGGCCAATAGCCTGATTGTTTCATCCTCTCCGGCAGCTCTCAGACTCCACTGGGATGTGTTCTTAAGTTTTCGTGGAGAAGACACCCGCCACGGCTTCA CCAAAAATCTCTACGATTCATTAAGCAAGCAAGACTTCAGAGTCTTCTTAGATGACTCTGGAATGACTCAGGGAGACGAGATTGCTCCAACTCTGATGGA GGCCATTGAAGATTCAGCCTTATCGATCATTATTCTTTCACCAAGGTATGCCAACTCTCATTGGTGTCTTGAGGAGCTAGCTAGAATATGCGAGTTGAAG AGGCTGATCCTGCCTGTGTTCTACCAAGTTGATCCATCCCATGTTAGGAGACAGAAGGGTCCTCTCGAACAAGATTTTATGAATCACATGGAGAGGTTTG GGGAGGAGAAGGTGGGCAAGTGGAGAGAAGCCATGAATAAAGTTGGTGGTATTTCTGGTTTCGTTTTTGACACCAGATCAGAAGATCAGTTGATTCGGCG TTTGGGGAATAGGATTTTGACAGAATTGAGAAAAACCCCGGTGGGTATAGCTAATTATACCGTTGGACTGGATTCCCGTGTAGAAGGCTTCAAGAAGAGG TTCATAGATGATAAATCAAATCGCGTTCAAGTTCTGGGACTTCATGGTATGGGCGGGATTGGTAAAACAACTCTTGCCACAGCTCTCTTCAATAAACTTG TGGGTCATTTTGAGAGTCGTAGTTTCATCTTGAACGTTAAAGATATTTCTAAAGAAGATGGTGGTCTAGTAAAACTGCAGAACAAACTTCTTCGTGATCT TTCCCCAAACTGGCCTCTTGTAAATAATATTGATAAAGGTGTTGCCGCAATCAAAATGTTGGTTCATGAGAAGCGGGTACTAATTGTCTTAGATGATGTG GATGATGTAAGCGAACTGAATGCACTAGCAGGGAATAGAAGCTGGTACGGTGAAGGAAGTCGAGTTATTGTTACAACAAGAAACAAAGCTGTTCTAGCTG AACACCTTGTCAATGAATTTTACGACGTTAGAGAGTTAGGTTACCCGGAAGCCTTACAACTTTTTAGTTATCATGCACTCAGAAAAGATAAACCCACAGA AGAATACATGAATATATCCAAGGAGATTGTGTCACTCACAGGAGGACTGCCTCTGGCTTTGGAAGTGTTTGGTTCTACTTTGTTTAATGAGAGAGGGTTA AATAGATGGGAAGATGCCCTGAAAAAACTGCAACGAATAAGGCCACATAATCTTCAGGATGTGTTACAAATAAGTTATGATGAGTTGGATGAAGATGAAA AGCATGTCTTCCTTGATATTGCTTGCTTCTTTATTAAAATGGGAATGAAAAGAGAGGAAGCAATTGATATTTTGAAGGGTTGTGGCTTTAGTGCTGAGAC AGTCATCACAGTTCTGACATCAAAATGTCTCATTAAAATTCGTGAAGATGATGAATTATGGATGCATGATCAACTCAGAGACATGGGAAGACAAATTGTT CAACATGAAAACCTTGCAGATCCCGGAGGGCGTAGTAGGCTATGGGATCGCGGTGAAATCATGTCAACGCTGATGCGCAAGAAGGGAACAGAAATTGTAC ATGGTATAGTTATGGACTTTGAAAAGAAAAATGTACGAGAACTCGACGGATTGAAAAGTGTAAGATTTTTCTTCGGCAAGGACAAGAGGATGGAGAGATG A
AA sequence Show only first row Show all	>Potri.015G043501.1 pacid=42774997 polypeptide=Potri.015G043501.1.p locus=Potri.015G043501 ID=Potri.015G043501.1.v4.1 annot-version=v4.1 MANSLIVSSSPAALRLHWDVFLSFRGEDTRHGFTKNLYDSLSKQDFRVFLDDSGMTQGDEIAPTLMEAIEDSALSIIILSPRYANSHWCLEELARICELK RLILPVFYQVDPSHVRRQKGPLEQDFMNHMERFGEEKVGKWREAMNKVGGISGFVFDTRSEDQLIRRLGNRILTELRKTPVGIANYTVGLDSRVEGFKKR FIDDKSNRVQVLGLHGMGGIGKTTLATALFNKLVGHFESRSFILNVKDISKEDGGLVKLQNKLLRDLSPNWPLVNNIDKGVAAIKMLVHEKRVLIVLDDV DDVSELNALAGNRSWYGEGSRVIVTTRNKAVLAEHLVNEFYDVRELGYPEALQLFSYHALRKDKPTEEYMNISKEIVSLTGGLPLALEVFGSTLFNERGL NRWEDALKKLQRIRPHNLQDVLQISYDELDEDEKHVFLDIACFFIKMGMKREEAIDILKGCGFSAETVITVLTSKCLIKIREDDELWMHDQLRDMGRQIV QHENLADPGGRSRLWDRGEIMSTLMRKKGTEIVHGIVMDFEKKNVRELDGLKSVRFFFGKDKRMER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27170			transmembrane receptors;ATP bi...		Potri.015G043501 [exp]	0	1
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Potri.004G032700 [exp]	1.00	0.8550
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	9.69	0.8445
					Potri.008G016200 [exp]	9.94	0.8283
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	14.49	0.7833
AT5G61140			U5 small nuclear ribonucleopro...		Potri.015G056501 [exp]	20.61	0.7733
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Potri.008G044600 [exp]	21.54	0.7959
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	22.27	0.8131
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	22.58	0.8174	SDG904
AT1G21651			zinc ion binding (.1)		Potri.019G066500 [exp]	24.45	0.7798
AT5G55660			DEK domain-containing chromati...		Potri.001G367400 [exp]	26.11	0.8011

Compare expression of checked genes

Potri.015G043501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.