Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 1196 / 0 transmembrane receptors;ATP binding (.1.2) AT1G27180 1191 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 454 / 6e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 430 / 2e-127 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 402 / 3e-118 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 346 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 344 / 8e-99 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G08450 340 / 6e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 339 / 6e-97 TAO1 target of AVRB operation1 (.1) AT2G14080 331 / 4e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053200 [exp] 2056 / 0 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.015G043501 [exp] 1042 / 0 AT1G27170 534 / 5e-176 transmembrane receptors;ATP binding (.1.2) Potri.001G028750 [exp] 485 / 1e-149 AT5G36930 516 / 3e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.004G088500 [exp] 486 / 4e-148 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.011G009400 [exp] 459 / 3e-143 AT5G36930 504 / 4e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069500 [exp] 464 / 2e-139 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.011G009251 [exp] 456 / 4e-139 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 454 / 8e-139 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008164 [exp] 454 / 2e-138 AT5G36930 491 / 3e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 513 / 8e-160 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10018616 [exp] 471 / 6e-143 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 468 / 1e-142 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 455 / 5e-138 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011741 [exp] 443 / 6e-134 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 438 / 5e-130 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004257 [exp] 400 / 1e-117 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 395 / 7e-115 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019708 [exp] 395 / 2e-114 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 386 / 3e-114 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05729 [poplar] [flax] NACHT NACHT domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.015G043600.2 pacid=42776051 polypeptide=Potri.015G043600.2.p locus=Potri.015G043600 ID=Potri.015G043600.2.v4.1 annot-version=v4.1 ATGGCCATGCCCCATAGCCTGATGGTTTCATCATCTCCGGCAGCTCTCAGACTCCAGTGGGATGTGTTCTTAAGTTTTCGTGGAGAAGACACCCGCCACG GCTTCACCAAAAACCTCTACGATTCATTAAGCAAGCAAGACATCAGAGTCTTCTTAGATGACTCTGGAATGACTCAGGGAGACGAGATTGCTCCAACTCT GATGGAGGCCATTGAAGATTCAGCCTTATCGATCATTATTCTTTCACCAAGGTATGCCAACTCTCATTGGTGTCTTGAGGAGCTAGCTAGAATATGCGAG TTGAGGAGGCTGATCCTGCCTGTGTTCTACCAAGTTGATCCATCCCATGTTAGGAGACAGAAGGGTCCTCTCGAACAAGATTTTATGAATCACATGGAGA GGTTTGGGGAGGAGAAGGTGGGCAAGTGGAGAGAAGCCATGTATAAAGTTGGTGGTATTTCTGGTTTCGTTTTTGACACCAGATCAGAAGATCAGTTGAT TCGGCGTTTGGGGAATAGGGTTATGACAGAATTGAGAAAAACCCCGGTGGGTATAGCTACTTATACCGTTGGACTGGATTCCCGTGTAGAAGACTTAAAG AAGAGGTTCATAGATGATAAATCAAATCGCGTTCAAGTTCTGGGACTTCATGGTATGGGCGGGATCGGTAAAACAACTCTTGCCACAGCTCTCTTCAATA AACTTGTTGGTCATTTTGAGAGTCGTAGTTTCATCTTCAACGTTAAAGATATTTCTAAAGAAGATGGTGGTCTAGTAAAACTGCAGAACAAACTTCTTGG TGATCTTTCCCCAAATTGGCCTCTTGTAAATAATATTGATAAAGGTGTTGCCGCAATCAAAATGCTGGTTCATGAGAAGCGGGTACTAATTGTCTTAGAT GATGTGGATGATGTAAGCGAACTGAATGCACTAGTAGGGAATAGAAGCTGGTTCGGTGAAGGAAGTCGAGTTATTGTTACAACAAGAAACAAAGCTGTTC TAGCTGAACACCTTGTCAATGAATTTTACGAGGTTAGAGAGTTAGGTGACCCGGAAGCCTTACAACTTTTTAGTTATCATGCACTAAGAAAAGATAAACC CACAGAAGAATACATGAATATATCCAAGGAGATTGTGTCACTCACAGGAGGACTGCCTCTGGCTTTGGAAGTGTTTGGTTCTACTTTGTTTAATGAGAGA GGGTTAAATAGATGGGAAGATGCCCTGAAAAAACTGCAACGAATAAGGCCACATAATCTTCAGGATGTGTTACGAATAAGTTATGATGAGTTGGATGAAG ATGGAAAGCATGTCTTCCTTGATATTGCTTGTTTGTTTTTTAAAATGGGAATGAAAAGAGAGGAAGCAATTGATATTTTGAAGGGTTGTGGCTTTAGTGC TGAGACAGTCATCAGAGTTCTGACATCAAAATGTCTCATTAAGATTCGTGAAGACGATGAATTATGGATGCATGATCAACTCAGAGACATGGGAAGACAA ATTGTTCAACATGAAAACCTTGCAGATCCCGGAGGGCGTAGCAGGCTATGGGATCGCGGTGAAATCATGTCAACGCTGATGCGCAAGAAGGGCACAGAAA GTGTACAAGGTATAGTTTTCGACTTCGAAAAGAAGAAATATACGAGAACTCGACGCATTTCTTGGGTTAGAGCACTGAATCCTTGTTCAGCACTTGCGTA CTTGATTGAAAAGTGTAAGATTTTTCTTCGACGAGGACAAGAGGGAGAAGAAAAGAAGAAATATACGAGAACTCAATGGATTTCTTGGGTTAGAGCACTG AATCCGTGTTCAGCACTTGCGTACTTGATTGAAAAGTGTAACATTTTTCTTCGACAAGGACAAGAGGAGGGAGAGATGATACTTGACACTGAAGGCTTTA AATCAATGGTTAATCTAAGACTGCTGCAAATCAATCATGCAAAACTGCAAGGGAAGTTCAAGAATTTTCCTGCTGGCCTGAAGTGGCTTCAGTGGAAAAA TTGTCCTATGAAAAATCTTCCTTCTGATTATGCTCCTCATGAGCTAGCTGTGCTTGATCTTTCGGAGAGTGGAATTGAACGAGTTTGGGGTTGGACCAGT AACAAGGTGGCCAAGAACTTGATGGTTATGGATCTTCACGGTTGCTATAATCTCGTGGCTTGTCCTGATTTATCTGGATGTAAAACCTTGGAAAAACTTA ATCTCCAGGGTTGCGTTCGGCTAACTAAGGTTCACAAATCAGTGGGGAATGCAAGGACATTACTTCAGTTGAACTTGAATGATTGCTCAAACCTTGTTGA ATTTCCAAGTGATGTATCTGGGCTAAAAGTTCTTCAGAACCTCAATCTCTCTAACTGTCCAAACTTGAAAGACTTGCCACAGGAAATAGGCAGCATGTAT TCCTTAAAACAACTTCTTGTTGATAAAACTGCTATATCAGTGCTGCCCGAATCTATTTTCCGCCTTACAAAACTGGAGAAGCTTAGTTTGAATGGATGCC AATTCATCAAAAGGCTGCCAAAACACTTGGGAAACCTGAGTTCTCTGAAGGAACTTTCTCTCAATCAATCTGCAGTAGAAGAACTGCCTGATTCTGTCGG ATCTTTGTCAAACCTTGAGAAACTAAGTTTGATGTGGTGTCAATCACTTACTGCGATTCCTGAATCTGTTGGCAATCTCCAGTTATTGACCGAAGTTTCC ATCAATAGCAGTGCAATCAAGGAATTACCTCCTGCAATCGGTTCATTACCTTATTTAAAAATATTATCAGCTGGAGGGTGTCGGTCCCTGAGCAAATTAC CTGATTCCATTGGAGGACTAGCTTCTATTAGCGAACTTGAGCTAGATGAGACATCAATCTCACATCTTCCAGAGCAGATTGGTGGTTTGAAAATGATTGA GAAGCTTTACATGAGGAAGTGTACATCTCTTAGTTCTTTGCCAGAATCAATTGGGAGCATGTTGAGTCTTACTACCTTAAACTTGTTTGGTTGTAATATT AATGAGTTGCCTGAATCCTTTGGGATGCTGGAAAACCTTGTGATGTTGAGATTACATCAGTGTAGAAAGCTCCAAAAGCTTCCAGTTTCTATTGGGAAGT TGAAGTCTTTATGCCACTTGTTAATGGAGAAGACAGCTGTTACAGTACTACCTGAAAGTTTTGGAAAGCTCTCTAACTTAATGATATTGAAAATGGGAAA AGAGCCACTTGAATCTCCCAGCACACAGGAGCAATTGGTTGTCCTCCCAAGTTCCTTCTTCGAGCTATCCTTGCTAAAAGAACTAAATGCCCGTGCTTGG AGAATATCAGGTAAAATTCCTGACGATTTTGAGAAACTGTCATCATTAGAGATGGTGGATCTTGGCCATAACAATTTCAGCAGTCTTCCATCTAGTTTAT GTGGCCTTTCTCTTCTAAGGAAGCTTCACTTGCCCCACTGCGAAGAACTTGAGTCTCTCCCTCCGCTTCCCTCAAGCTTAGTAGAAGTGGATGTTTCCAA CTGCTTTGCATTGGAAACTATGTCGGATGTTTCAAACTTGGGAAGCTTAACGTTGCTGAACATGACAAATTGCGAGAAAGTGGTGGATATTCCTGGCATT GAATGCTTGAAATCCTTGAAACGGTTATATATGAGCAATTGCAAGGCATGCTCCTTGAAAGTAAAGAGAAGGCTATCCAAGGTTTGCTTGAGGAATATAC GCAACCTAAGCATGCCTGGGAGCAAAATCCCAGATTGGTTTTCTCAAGAAGATGTAAAATTTTCAGAGCGAAGAAACCGTGAAATCAAAGCTGTGATTAT AGGTGTCGTTGTCTCTCTCGACCGTCAGATACCAGAGCAGTTGAGATATTTGCCAGTTGTACCAGACATTCAGGTCAATCTACTGGATCAGAATAAACCT ATTTTCAGCACCACATTGTACTTACAGGGAATACCAAAGACTCATGAAGATCATATCCACTTATGCCGATATTCACATTTCAATCCATTGGTTTTAATGC TGAAAGATGGATCTGAGATACAGGTAAGAAAGCGAAAACCACCTGTGATTGAAGGGGTCGAGCTGAAGAAATGTGGAATTCATTTGGTTTATGAAAATGA CGATGATTATGGTGGAAATGAAGAATCCTTGGATGAAAGTCAGCAATCTGTATCACAAAAACTGGCCAATTTTTTCAATTCGTACGAGGAAGATAGCCAA GTTTGTTGA
AA sequence Show only first row Show all	>Potri.015G043600.2 pacid=42776051 polypeptide=Potri.015G043600.2.p locus=Potri.015G043600 ID=Potri.015G043600.2.v4.1 annot-version=v4.1 MAMPHSLMVSSSPAALRLQWDVFLSFRGEDTRHGFTKNLYDSLSKQDIRVFLDDSGMTQGDEIAPTLMEAIEDSALSIIILSPRYANSHWCLEELARICE LRRLILPVFYQVDPSHVRRQKGPLEQDFMNHMERFGEEKVGKWREAMYKVGGISGFVFDTRSEDQLIRRLGNRVMTELRKTPVGIATYTVGLDSRVEDLK KRFIDDKSNRVQVLGLHGMGGIGKTTLATALFNKLVGHFESRSFIFNVKDISKEDGGLVKLQNKLLGDLSPNWPLVNNIDKGVAAIKMLVHEKRVLIVLD DVDDVSELNALVGNRSWFGEGSRVIVTTRNKAVLAEHLVNEFYEVRELGDPEALQLFSYHALRKDKPTEEYMNISKEIVSLTGGLPLALEVFGSTLFNER GLNRWEDALKKLQRIRPHNLQDVLRISYDELDEDGKHVFLDIACLFFKMGMKREEAIDILKGCGFSAETVIRVLTSKCLIKIREDDELWMHDQLRDMGRQ IVQHENLADPGGRSRLWDRGEIMSTLMRKKGTESVQGIVFDFEKKKYTRTRRISWVRALNPCSALAYLIEKCKIFLRRGQEGEEKKKYTRTQWISWVRAL NPCSALAYLIEKCNIFLRQGQEEGEMILDTEGFKSMVNLRLLQINHAKLQGKFKNFPAGLKWLQWKNCPMKNLPSDYAPHELAVLDLSESGIERVWGWTS NKVAKNLMVMDLHGCYNLVACPDLSGCKTLEKLNLQGCVRLTKVHKSVGNARTLLQLNLNDCSNLVEFPSDVSGLKVLQNLNLSNCPNLKDLPQEIGSMY SLKQLLVDKTAISVLPESIFRLTKLEKLSLNGCQFIKRLPKHLGNLSSLKELSLNQSAVEELPDSVGSLSNLEKLSLMWCQSLTAIPESVGNLQLLTEVS INSSAIKELPPAIGSLPYLKILSAGGCRSLSKLPDSIGGLASISELELDETSISHLPEQIGGLKMIEKLYMRKCTSLSSLPESIGSMLSLTTLNLFGCNI NELPESFGMLENLVMLRLHQCRKLQKLPVSIGKLKSLCHLLMEKTAVTVLPESFGKLSNLMILKMGKEPLESPSTQEQLVVLPSSFFELSLLKELNARAW RISGKIPDDFEKLSSLEMVDLGHNNFSSLPSSLCGLSLLRKLHLPHCEELESLPPLPSSLVEVDVSNCFALETMSDVSNLGSLTLLNMTNCEKVVDIPGI ECLKSLKRLYMSNCKACSLKVKRRLSKVCLRNIRNLSMPGSKIPDWFSQEDVKFSERRNREIKAVIIGVVVSLDRQIPEQLRYLPVVPDIQVNLLDQNKP IFSTTLYLQGIPKTHEDHIHLCRYSHFNPLVLMLKDGSEIQVRKRKPPVIEGVELKKCGIHLVYENDDDYGGNEESLDESQQSVSQKLANFFNSYEEDSQ VC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27170			transmembrane receptors;ATP bi...		Potri.015G043600 [exp]	0	1
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.006G199500 [exp]	6.00	0.7596
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036600 [exp]	9.48	0.7405
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Potri.005G154000 [exp]	14.14	0.7792
AT5G13950			unknown protein		Potri.014G144100 [exp]	21.49	0.7938
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Potri.015G143000 [exp]	38.72	0.7771
AT5G55600			agenet domain-containing prote...		Potri.016G007500 [exp]	39.34	0.7755
AT4G37480			Chaperone DnaJ-domain superfam...		Potri.007G052400 [exp]	45.51	0.6808
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Potri.003G018800 [exp]	60.79	0.6896	Pt-AKT2.1
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Potri.014G133400 [exp]	71.13	0.7538	APG3.1
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170300 [exp]	74.76	0.7279

Compare expression of checked genes

Potri.015G043600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.