Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18240 461 / 2e-161 Ribosomal protein S24/S35, mitochondrial (.1.2) AT4G21460 458 / 1e-160 Ribosomal protein S24/S35, mitochondrial (.1) AT1G73770 49 / 9e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046000 [exp] 68 / 2e-13 AT1G73770 / unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022237 [exp] 546 / 0 AT3G18240 513 / 0.0 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10008778 [exp] 545 / 0 AT3G18240 520 / 0.0 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10020495 [exp] 224 / 3e-71 AT3G18240 233 / 8e-75 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10012471 [exp] 127 / 1e-34 AT3G18240 109 / 2e-28 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10012470 [exp] 99 / 1e-25 AT3G18240 96 / 2e-25 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10013498 [exp] 49 / 7e-07 AT1G73770 56 / 5e-10 unknown protein Lus10007968 [exp] 49 / 8e-07 AT1G73770 54 / 2e-09 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [poplar] [flax] RF PF10213 [poplar] [flax] MRP-S28 Mitochondrial ribosomal subunit protein
Representative CDS sequence Show only first row Show all	>Potri.015G044100.1 pacid=42775433 polypeptide=Potri.015G044100.1.p locus=Potri.015G044100 ID=Potri.015G044100.1.v4.1 annot-version=v4.1 ATGATGAGAAGATTTCTACCAAGAAATGTCACTCTCTACACTCGCCATCTCCTTCAGTCTTCTCCCCACCCCAACCCCACAATCCCCAACCCCTCCCTCG CTGCTTCAACACACCCCAGACTCAGGTTCTACTCCGACTCGTCCAACAATACCCCTCCTGAACCACTCCCTGAATCTTCAGCTCTAGCGGAACTGAGAAA GAAAGATGATTCTGATGAAGTTAAGGATGTGAGTAACAAAGAGCTAAGAGAGATGATGGATAAGTACTTCAAGGGCGACGGGGAAGTGCTGCCTTCGATA ATGGAAGCAGTTTTACAGAGAAAGTTATCGCGGAAGCATGAGGAGACTGATGATGAGTTGATGGAAGAACTTCGAATGAAGCCATTGAGTGATGTGGATG CTGAAGAGTTTCAATCGGATTTCGATGAACTGTACGAGACTGATAAGGAGCTCAATGATTTGTGTGATGCTAAAGAATATGTGGCGAAGAAAATGATGCA GGATCAATACTTCAATATGGATGACAAGAAGTGGGATGAGATGGTAAAGGAGGCGATGGACCATGGATTTATAAAGGATACAAAGGAGTGTGAGGAAATT CTGGAGGACATGCTTAGCTGGGATAAGCTTCTTCCAGATGACATAAAAGAGAAGGTGGAAAAGAAATTCAATGAACTGGGGGATATGTGCGAAAGAGGAG AGATTGAGGCTGAAGAAGCTTACGAGCTGTTCAAGAAATTTGAGGATGAGTTGGTCATGGATTATGTAAAGAAAATGGAAGCTGAAGGCCCACCACAGTT TGATGAGGCTACTGTTCCAGACAAGAAAAAGCACTTAGATGACCCACCAGGTGTGGGGCCAATTATTAGGTGGCAAACACGGGTAGTCTTTGCTCCAGGT GGTGATGCATGGCATCCCAAAAACCGAAAAGTGAAAATGTCTGTTACTGTCAAAGAACTTGGGCTTTCAAAACCTCAATTTAGACGGTTGAGGGAACTGG TTGGAAAAAGGTACCATCCTGGAAGAGATGAACTTACAATCACCAGTGAGAGGTTTGAACACCGAGAGGAAAACAGAAAAGATTGCCTTAGGACTCTCTT TGCACTCATCGAAGAAGCTGGGAAAGCTACCAAATTGGCAGAAGAAGCTCGAGTTTCATATTGCAAGGACAGACTTAGAGCCAATCCAGCTTTCATGGTG AGGTTGCATTCCAAGATCACTGGGCAAGGATCTAACACCATTTCTGCTTGA
AA sequence Show only first row Show all	>Potri.015G044100.1 pacid=42775433 polypeptide=Potri.015G044100.1.p locus=Potri.015G044100 ID=Potri.015G044100.1.v4.1 annot-version=v4.1 MMRRFLPRNVTLYTRHLLQSSPHPNPTIPNPSLAASTHPRLRFYSDSSNNTPPEPLPESSALAELRKKDDSDEVKDVSNKELREMMDKYFKGDGEVLPSI MEAVLQRKLSRKHEETDDELMEELRMKPLSDVDAEEFQSDFDELYETDKELNDLCDAKEYVAKKMMQDQYFNMDDKKWDEMVKEAMDHGFIKDTKECEEI LEDMLSWDKLLPDDIKEKVEKKFNELGDMCERGEIEAEEAYELFKKFEDELVMDYVKKMEAEGPPQFDEATVPDKKKHLDDPPGVGPIIRWQTRVVFAPG GDAWHPKNRKVKMSVTVKELGLSKPQFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLFALIEEAGKATKLAEEARVSYCKDRLRANPAFMV RLHSKITGQGSNTISA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18240			Ribosomal protein S24/S35, mit...		Potri.015G044100 [exp]	0	1
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.005G153200 [exp]	1.00	0.9303
AT5G64650			Ribosomal protein L17 family p...		Potri.007G107100 [exp]	2.44	0.8851
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.005G125400 [exp]	5.65	0.9024
AT4G37090			unknown protein		Potri.007G034600 [exp]	7.41	0.8716
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.004G055400 [exp]	20.39	0.8439
AT5G62650			Tic22-like family protein (.1)		Potri.004G072100 [exp]	26.19	0.8595
AT3G15000			cobalt ion binding (.1)		Potri.011G112200 [exp]	35.74	0.8606
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G075900 [exp]	36.98	0.8077
AT2G35790			unknown protein		Potri.010G219400 [exp]	37.22	0.8075
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.019G034300 [exp]	43.88	0.8341

Compare expression of checked genes

Potri.015G044100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.