Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18270 312 / 5e-105 CYP77A5P "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G054200 [exp] 402 / 7e-140 AT3G18270 536 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020434 [exp] 334 / 6e-114 AT3G18270 483 / 6e-171 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1) Lus10007062 [exp] 323 / 3e-109 AT3G18270 499 / 5e-177 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0256 [poplar] [flax] Enolase_TIM PF13378 [poplar] [flax] MR_MLE_C Enolase C-terminal domain-like
Representative CDS sequence Show only first row Show all	>Potri.015G044400.2 pacid=42774855 polypeptide=Potri.015G044402.1.p locus=Potri.015G044400 ID=Potri.015G044400.2.v4.1 annot-version=v4.1 ATGCATGATCGAAAGGGTTCTAAGCTTTGTGGTAAAGTAAGTACTAAATGCTTTCAATGGGGTCTCTCCATCTCTCCCTTAAAACCCCTCCAAAACCCTC GAAACCTCCAGATCCCATTTGCAAGATTTATGCAACAAAAGCAATGGCTGGATCAAAACCCACAAAAGCTTGATAAAGTAGAAAATGTGGCAATTAGGAT TGATTTGAGCGATGGTTGTGTGGGGTGGGGTGAGGCACCGATGTTGCCATTTGTTACTGCAGAGGATCAGTCCACTGCAATGGTTAAGGCTAGCGAGGCC TGTGAGTTGCTGAAGGACAGTCCATCGATGACGCTGGGCTTGGTTTTGGACATTCTTCCCGGACACGAGTTTGCTTCGATTAGGGAAGGAGTTGAGATGA CATTAACTGATGCAGTGGCTAAAAGCATTGAATTGGCTTCAAAGTACCCAAAACAAGGATTCAAAACTTTAAAGTTGAAGGTGGGAAAGAACCCGAGGGA GGACGTAGAGGTTCTTCAAGCTATTCGTGCGGTTCATCCTGATTGCTTATTTATCTTGGATGCTAATGAGGTTCATAGAGATGATTGGGAAGGACTTGGT CATGTTACCCATATTGCGAAAGGCAAATATGGGGTATCTGTTGCAGCAGATGAGAGTTGTCATAGTTTAGTTGATGCGAAGAGAATAATAACAGGAAATC TTGCAGATGTCATTAACATTAAGCTTGCCAAAGTTGGCATTGTTGGGGGACTTGAAATTATTGAGGAGGCAAGGACATCAGGATTGGATCCGATGATTGG TGGAATGGTTGAGACCAGACTAGCCATGGGCTTTACTGGTCATCTTGCTGCTGGATTTGGCTGTTTCAAGGATTATGAACATATTTTGGCACGCTTAGAA ATGATTGAGCACAGGGTCCTTGTTGGTTATTGTTAA
AA sequence Show only first row Show all	>Potri.015G044400.2 pacid=42774855 polypeptide=Potri.015G044402.1.p locus=Potri.015G044400 ID=Potri.015G044400.2.v4.1 annot-version=v4.1 MHDRKGSKLCGKVSTKCFQWGLSISPLKPLQNPRNLQIPFARFMQQKQWLDQNPQKLDKVENVAIRIDLSDGCVGWGEAPMLPFVTAEDQSTAMVKASEA CELLKDSPSMTLGLVLDILPGHEFASIREGVEMTLTDAVAKSIELASKYPKQGFKTLKLKVGKNPREDVEVLQAIRAVHPDCLFILDANEVHRDDWEGLG HVTHIAKGKYGVSVAADESCHSLVDAKRIITGNLADVINIKLAKVGIVGGLEIIEEARTSGLDPMIGGMVETRLAMGFTGHLAAGFGCFKDYEHILARLE MIEHRVLVGYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.015G044400 [exp]	0	1
AT3G28720			unknown protein		Potri.004G123900 [exp]	2.00	0.7707
					Potri.018G035750 [exp]	2.44	0.8149
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.001G417400 [exp]	5.47	0.7057
AT5G08560			transducin family protein / WD...		Potri.008G002700 [exp]	11.61	0.7696
AT5G06750			Protein phosphatase 2C family ...		Potri.016G045600 [exp]	15.23	0.6683
AT3G15040			Protein of unknown function, D...		Potri.016G076300 [exp]	15.36	0.6348
AT3G17810		PYD1	pyrimidine 1 (.1)		Potri.012G043300 [exp]	22.44	0.6691
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.005G217400 [exp]	22.64	0.6698
					Potri.009G083702 [exp]	23.21	0.7432
AT3G62900			CW-type Zinc Finger (.1)		Potri.013G020200 [exp]	24.26	0.6853

Compare expression of checked genes

Potri.015G044400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.