Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 359 / 1e-116 Protein kinase superfamily protein (.1) AT1G67000 363 / 2e-115 Protein kinase superfamily protein (.1) AT1G66920 346 / 9e-112 Protein kinase superfamily protein (.1.2) AT1G66930 347 / 2e-111 Protein kinase superfamily protein (.1) AT4G18250 352 / 3e-111 receptor serine/threonine kinase, putative (.1) AT1G66910 347 / 3e-111 Protein kinase superfamily protein (.1) AT5G38280 341 / 5e-109 PR5K PR5-like receptor kinase (.1) AT1G70250 344 / 7e-109 receptor serine/threonine kinase, putative (.1) AT1G66980 344 / 3e-106 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39020 336 / 9e-106 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045200 [exp] 973 / 0 AT5G38260 403 / 1e-132 Protein kinase superfamily protein (.1) Potri.012G054550 [exp] 534 / 0 AT1G67000 390 / 2e-124 Protein kinase superfamily protein (.1) Potri.004G076500 [exp] 504 / 7e-173 AT5G38260 409 / 1e-134 Protein kinase superfamily protein (.1) Potri.004G076100 [exp] 497 / 5e-170 AT5G38260 401 / 9e-132 Protein kinase superfamily protein (.1) Potri.010G120950 [exp] 490 / 2e-167 AT5G38260 371 / 3e-120 Protein kinase superfamily protein (.1) Potri.017G116900 [exp] 426 / 3e-142 AT1G66910 477 / 2e-160 Protein kinase superfamily protein (.1) Potri.015G045101 [exp] 423 / 6e-141 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G117285 [exp] 422 / 2e-140 AT1G66920 439 / 2e-146 Protein kinase superfamily protein (.1.2) Potri.004G097000 [exp] 410 / 2e-136 AT5G38260 410 / 5e-135 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014923 [exp] 332 / 2e-106 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025553 [exp] 323 / 2e-102 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014924 [exp] 317 / 6e-100 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025547 [exp] 306 / 9e-97 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10022359 [exp] 303 / 3e-95 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10026761 [exp] 300 / 5e-95 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10025492 [exp] 301 / 6e-94 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10025545 [exp] 289 / 3e-93 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 293 / 3e-90 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 237 / 1e-73 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.015G044875.1 pacid=42775771 polypeptide=Potri.015G044875.1.p locus=Potri.015G044875 ID=Potri.015G044875.1.v4.1 annot-version=v4.1 ATGGATCCCAATAACTCCTTCGCATTCAAAAAGCTTCTTTCTATCTACAACTGTATCTTTCTTTTCACATACTTGGCCACCCAAACTGTATCACAGCATC CAAAGTTTAAGTCTTGTGAACCAAAAAACTGTGGTGCTGGCCCTAACATAAGCTGCCCTTTTTGGCTATCTCAAGAACAAGAACCCTTTTGTGGCCATCC AAATTTTATGCTCACCTGCAATATCTCTTACGCCACTAATTCTATGCGCGTGGCTAATGCTGCTGTGTATGAGGAAACCTGTCCACCTCTTTTGCATAAC ATTAGCCTTGATAGAACACCCCTTACTATTAGTCCTGGCTATACTAATTTCTCCTTCTTCTACAATTGTTTTGAAGATATTGGTAGTCTGCTTGGAGAAA ATTATCGTGAGGTTTTGAAGATGGGGTTCCTTATGAACTGGACTGCTCATGATTGTAGCACTTGTGAGAGAAGTGGTGGGCGTTGTGGATTTGAGAATAA TGAATTCAATTGTTTTTGCCGTGATGGGCCTCGTCTCAAATCTTGCGATGCTGGCTCAAGTCTTAATGTCGGACGGGAGATTATTATTATTATTATTATT ATTGGAATTTTATTCATCTGCGTGATTCTTTATTCCAGAAGGAAGGCCTCATCAACTACCACACCTATTTTTCTAAAGAAGAAACATAATCAAGATCTTG AGGTTTTCATAAGAAACCACCGACCACTAGCTCTGAAAAGATACAATCTGTCGGATGTTAAGAAAATGACCAATTTTTTCAAAGATAAACTTGGTCAAGG AGGCTATGGAATTGTTTACAAAGGAAAGCTACAGGATGGCCATCTGGTGGCAGTGAAGGTCATGCAAGCTTCAAAAGGGGACGGGGAAGAATTCATAAAT GAGGTTGCAAGCATTAGTAAAACTTCCCATGTCAATATTGTCACTCTACTGGGATTTTGTTTGGAGGGTGACAAAAGAGTTCTCATTTATGACTTCATGG TCAATGGATCGCTTGAAAAGTTCATAAATCATGAAAATGCTTTGCAAGCCAATCAACAGCTGGGATGGATTAAATTGTACCAGATTTTAATTGGCGTTGC TCGAGGGCTTGAGTATTTGCATCGAGGGTGCAATACAAGGATTGTGCATTTTGACATTAACCCTCGTAACATTCTTCTTGATGCAGATTTTCCCCCTAAG ATATACATGAATTCAACAATATCCGACTTTGGACTTGCGAAGCCATGCGCTAGGAAGGAGATCAATGTATCGCTATTGGAGGCAAGAGGAACCATTGGAT ATATAGCACCAGAAGTGTTCAGTAGAAACTGTGGACAAGTTTCACACAAGTCCGATGTCTATAATTATGGAATGATGGCTCTAGAAATTGTTGGAGGACG AAAGAATCATGAAGCTGAAATGAGTTCCAGTAGCGAAAAATATTTTCCAGACTGGATTTACAAGCATCTTGAGCTAGTTGATGAGTGTGAATTGAATGGC ACGACAAATGCAGAACAATCTGATATTGTGAGGCAAATAGCAATAGTTGGCTTTTGGTGCATCCTCACAAATCCATCTGATAGACCATCCATGAGAAAAG TGATAGAAATGTTGGAAGGACCTCTTGGAGCATTGAAGATTCCACCGAAGCCTCGCCTGTATTCTCCTCCAATATTACTTTCATATTCATCTACTACATC ATTAGCATGA
AA sequence Show only first row Show all	>Potri.015G044875.1 pacid=42775771 polypeptide=Potri.015G044875.1.p locus=Potri.015G044875 ID=Potri.015G044875.1.v4.1 annot-version=v4.1 MDPNNSFAFKKLLSIYNCIFLFTYLATQTVSQHPKFKSCEPKNCGAGPNISCPFWLSQEQEPFCGHPNFMLTCNISYATNSMRVANAAVYEETCPPLLHN ISLDRTPLTISPGYTNFSFFYNCFEDIGSLLGENYREVLKMGFLMNWTAHDCSTCERSGGRCGFENNEFNCFCRDGPRLKSCDAGSSLNVGREIIIIIII IGILFICVILYSRRKASSTTTPIFLKKKHNQDLEVFIRNHRPLALKRYNLSDVKKMTNFFKDKLGQGGYGIVYKGKLQDGHLVAVKVMQASKGDGEEFIN EVASISKTSHVNIVTLLGFCLEGDKRVLIYDFMVNGSLEKFINHENALQANQQLGWIKLYQILIGVARGLEYLHRGCNTRIVHFDINPRNILLDADFPPK IYMNSTISDFGLAKPCARKEINVSLLEARGTIGYIAPEVFSRNCGQVSHKSDVYNYGMMALEIVGGRKNHEAEMSSSSEKYFPDWIYKHLELVDECELNG TTNAEQSDIVRQIAIVGFWCILTNPSDRPSMRKVIEMLEGPLGALKIPPKPRLYSPPILLSYSSTTSLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.015G044875 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.015G045200 [exp]	1.00	0.9841
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.003G131300 [exp]	3.74	0.9646
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.003G046700 [exp]	4.24	0.9585
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Potri.003G088300 [exp]	5.29	0.9570
AT3G61670			Protein of unknown function (D...		Potri.001G093900 [exp]	6.24	0.9348
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	9.16	0.9505
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099100 [exp]	12.64	0.9411
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063900 [exp]	13.22	0.9507
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.017G094800 [exp]	13.41	0.9334
					Potri.001G093100 [exp]	13.78	0.9309

Compare expression of checked genes

Potri.015G044875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.