Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18390 659 / 0 Protein kinase superfamily protein (.1.2) AT1G25390 463 / 1e-155 Protein kinase superfamily protein (.1) AT5G38210 460 / 8e-154 Protein kinase family protein (.1) AT1G66880 459 / 9e-147 Protein kinase superfamily protein (.1) AT2G23450 293 / 3e-89 Protein kinase superfamily protein (.1.2) AT1G69910 284 / 1e-86 Protein kinase superfamily protein (.1) AT5G66790 273 / 1e-82 Protein kinase superfamily protein (.1) AT1G69730 248 / 9e-72 Wall-associated kinase family protein (.1) AT5G02070 243 / 2e-71 Protein kinase family protein (.1) AT3G53840 241 / 9e-71 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G044750 [exp] 822 / 0 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G054725 [exp] 708 / 0 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.010G120800 [exp] 572 / 0 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.017G118250 [exp] 560 / 0 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.015G045200 [exp] 556 / 0 AT5G38260 403 / 1e-132 Protein kinase superfamily protein (.1) Potri.004G096900 [exp] 556 / 0 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 555 / 0 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 523 / 3e-178 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G097100 [exp] 498 / 3e-169 AT5G38210 525 / 4e-179 Protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029132 [exp] 592 / 0 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 555 / 0 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 553 / 0 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 407 / 2e-131 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10009150 [exp] 368 / 1e-121 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10032741 [exp] 301 / 2e-92 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 279 / 8e-85 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10000741 [exp] 276 / 5e-83 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 272 / 9e-82 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 260 / 9e-78 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G045101.1 pacid=42775785 polypeptide=Potri.015G045101.1.p locus=Potri.015G045101 ID=Potri.015G045101.1.v4.1 annot-version=v4.1 ATGGATCCCAATAACTCCTTCGCATTCAGAAAGCTTCTTCCTATCTACAACTGTATCTTTCTTTTCACATACTTGGCCAACCAAACTGTATCACAGCATC CAAAGTTCAAGTCTTGTGAACCAAAAAACTGTGGTGGTGCTGGCCCTAACATAAGCTACCCTTTTTGGCTATCTCAAGAACAAGAATCCTTTTGTGGCTA TCCAAATTTTATGCTCAACTGCAGTGACAAAGGGCCAGTACTCGCAATTTCCAATGATGTTTATATCATTAAAAGTATCTCTTATGCCAATAATTCTTTG CTTGTGGCTAATGCTGCTGTGTATGAGGAAACCTGTCCAACTCCTTTGCATAACATTAACCTTGATAGAACACCCTTTACTATTAGTCCTGGCTATACTA ATCTCTCCTTCTTCTACAGTTGTACCTCAAAGCCCAAAGATTACAACTATCTCTATAATTTAAGCTGTGCCACAAATTCTACACATTATTCTTTTGCCGG TTTTCACTTCGAAGAAATAGAGAAGCACAGCAATTACTCATTGAAGTCATGCCATGATTTTGTTATTGCTCCTATCCACACTGGTGAAGATAATGGTAGT CTGCTTGGAGAAAATTATCGTGAGGTTTTGAAGATGGGGTTCCTTATGAATTGGACTGCTCCTAATTGTAGCACTTGTGAGAGCAGTGGTGGGCGTTGTG GGTTTGAGAATCATGAATGCATTTGTTTTTGCCGTGATCGGCCTCGTCTCAAATCTTGTGATGCTGGAACTAGTTTGAATGTGGGCCGGAAGGTTGCCAT AGGTCTTGGGGCATCTCTTGGTACATTAGTCACAATGCTCATAGCCTTCTTCTTCTGGTACCGCCGCAAGAAAAGGCAATATGAATCCATTTTCTCTAGA AGCATCAAATCGCTACCGTCTTCAAAGGCACATACGGAGATGCGAAGTAGCTACAATGGTGCTCATCTATTCTCTTATGAAGAACTTGAAGAGGCCACTA ACAATTTTGATAAGACCAGAGAGCTTGGAGATGGAGGCTTCGGGACAGTATATTACGGAAAACTTCCAGATGGGCTTGAAGTTGCAGTCAAGCGCTTATA CGAGAACAATTTTAAGAGGCTTGAGCAGTTCTTGAATGAAGTTGATATTCTAACTCCCTTGCGCCATCAAAACCTTGTCCTACTGCATGGATGCACCTCT CGGGACAGCCGTGAACTCCTACTAGTATATCAGTACATTCCCAATGGTACACTTGCTGATCATCTTCATGGTGAAAGAGCAAAGCCTGGTGCACTCCCTT GGTCTACTCGAATGAACATTGCTGTGGAGACTGCATGTGCACTGGCATATCTTCATGCTTCTGTTATAGTGCACCGTGACGTGAAAACCAGCAATATTCT CCTTGACAACAATTTCTGTGTTAAAGTTGCAGATTTTGGCCTATCTCGACTCTTTCCCACAGATGTCACCCATGTTTCAACTGCTCCACAAGGGACTCCT GGTTATGTTGATCCAGAATATCATGAATGCTACCAGCTGACCGATAAGAGTGATGTCTATAGCTTTGGGGTGGTCTTGATTGAGCTTATTTCATCAATGC CTGCTGTTGATATCTCTAGACACCGGCATGAAATTAATTTGTCTACCATGGCAATCAATAAAATCCAAAGCGATTCATTGAATGAACTTGTTGACCCCAG TCTGGGGTTTGAATCAGATTACGCAGCGAGAAAAATGATTAGGGCTGTGGCTGAGCTGGCTTTTCAATGTCTGCAGAATGCAAAGGAGTTGAGACCATCT ATGGAAAAAGTGTTCCATATTCTAAAAGAAATACAAAGCAGAGACTACAATGCGGAAAAGGCAGAGAATATAAATAGTCCTTCAGATGATGTTGTGTTGT TAAAGAGTGGTCCGATTCCGCCTTCACCTGATACTGTCACTGTTACATGGATGAGCACGTCCTCGACACCTCATGCCAGTGTTTAA
AA sequence Show only first row Show all	>Potri.015G045101.1 pacid=42775785 polypeptide=Potri.015G045101.1.p locus=Potri.015G045101 ID=Potri.015G045101.1.v4.1 annot-version=v4.1 MDPNNSFAFRKLLPIYNCIFLFTYLANQTVSQHPKFKSCEPKNCGGAGPNISYPFWLSQEQESFCGYPNFMLNCSDKGPVLAISNDVYIIKSISYANNSL LVANAAVYEETCPTPLHNINLDRTPFTISPGYTNLSFFYSCTSKPKDYNYLYNLSCATNSTHYSFAGFHFEEIEKHSNYSLKSCHDFVIAPIHTGEDNGS LLGENYREVLKMGFLMNWTAPNCSTCESSGGRCGFENHECICFCRDRPRLKSCDAGTSLNVGRKVAIGLGASLGTLVTMLIAFFFWYRRKKRQYESIFSR SIKSLPSSKAHTEMRSSYNGAHLFSYEELEEATNNFDKTRELGDGGFGTVYYGKLPDGLEVAVKRLYENNFKRLEQFLNEVDILTPLRHQNLVLLHGCTS RDSRELLLVYQYIPNGTLADHLHGERAKPGALPWSTRMNIAVETACALAYLHASVIVHRDVKTSNILLDNNFCVKVADFGLSRLFPTDVTHVSTAPQGTP GYVDPEYHECYQLTDKSDVYSFGVVLIELISSMPAVDISRHRHEINLSTMAINKIQSDSLNELVDPSLGFESDYAARKMIRAVAELAFQCLQNAKELRPS MEKVFHILKEIQSRDYNAEKAENINSPSDDVVLLKSGPIPPSPDTVTVTWMSTSSTPHASV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18390			Protein kinase superfamily pro...		Potri.015G045101 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.015G045200 [exp]	2.44	0.9612
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088400 [exp]	3.46	0.9455
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151600 [exp]	4.47	0.9435
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.010G189800 [exp]	9.05	0.9477
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G150500 [exp]	9.79	0.9285
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043700 [exp]	12.64	0.9440
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	18.89	0.9330
AT5G38260			Protein kinase superfamily pro...		Potri.015G044875 [exp]	20.12	0.9263
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	21.67	0.9291
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	23.23	0.9317

Compare expression of checked genes

Potri.015G045101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.