Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 403 / 2e-132 Protein kinase superfamily protein (.1) AT1G66910 393 / 2e-128 Protein kinase superfamily protein (.1) AT1G67000 395 / 2e-126 Protein kinase superfamily protein (.1) AT1G66920 386 / 3e-126 Protein kinase superfamily protein (.1.2) AT1G66930 387 / 9e-126 Protein kinase superfamily protein (.1) AT4G18250 362 / 2e-114 receptor serine/threonine kinase, putative (.1) AT1G70250 357 / 4e-113 receptor serine/threonine kinase, putative (.1) AT5G38280 352 / 1e-112 PR5K PR5-like receptor kinase (.1) AT1G66980 353 / 7e-109 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39020 340 / 2e-106 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G044875 [exp] 978 / 0 AT5G38260 360 / 8e-117 Protein kinase superfamily protein (.1) Potri.015G045101 [exp] 585 / 0 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G054550 [exp] 584 / 0 AT1G67000 390 / 2e-124 Protein kinase superfamily protein (.1) Potri.004G076500 [exp] 572 / 0 AT5G38260 409 / 1e-134 Protein kinase superfamily protein (.1) Potri.004G076100 [exp] 565 / 0 AT5G38260 401 / 9e-132 Protein kinase superfamily protein (.1) Potri.010G120950 [exp] 561 / 0 AT5G38260 371 / 3e-120 Protein kinase superfamily protein (.1) Potri.017G116900 [exp] 479 / 6e-162 AT1G66910 477 / 2e-160 Protein kinase superfamily protein (.1) Potri.017G117120 [exp] 477 / 8e-161 AT5G38260 430 / 2e-142 Protein kinase superfamily protein (.1) Potri.017G117285 [exp] 464 / 7e-156 AT1G66920 439 / 2e-146 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014923 [exp] 363 / 1e-117 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025553 [exp] 359 / 3e-115 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014924 [exp] 341 / 1e-108 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025547 [exp] 316 / 2e-99 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 314 / 2e-99 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10025492 [exp] 309 / 4e-96 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10022359 [exp] 307 / 5e-96 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 293 / 5e-94 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 299 / 9e-92 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 246 / 2e-76 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.015G045200.1 pacid=42775046 polypeptide=Potri.015G045200.1.p locus=Potri.015G045200 ID=Potri.015G045200.1.v4.1 annot-version=v4.1 ATGGATCCCAATAAGTCCTTCGCATTCAGAAAGCTTCTTTCTATCTACAACTGTATCTTTCTTTTCACATACTTGGCCACCCAAACTGTATCACAGCATC CAAAGTTTAAGTCTTGTGAACTAAAAAACTGTGGTGCTGGCCCTAACATAAGCTACCCTTTTTGGCTATCTCAAGAACAAGAACCCTTTTGTGGCCATCC AAATTTTATGCTCACCTGCAGTGACAAAAGGCCAGCACTCACAATTTCCAATGATGTTTATATCATTAAAGATATCTCTTACGCCACTAATTCTATGCGC GTGGCTAATGCTGCTGTGTATGAGGAAACCTGTCCACCTCTTTTGCATAACATTAGCCTTGATAGAACACCCCTTACTATTAGTCCTGGCTATACTAATT TCTCCTTCTTCTACAATTGTACCTTAAAGCCCGAAGATTACTACACTCTCTATGCAATAAGTTGTGCCACAAATTCTACACATTATTCTATTGCCGGTTT TCACTTGGAAGAAATAGAGATGCGCAGCAATTACTCATTGAATTCATGCCACGATTTTGCTAATGCTCCTATCCACACTGGTGAAGATATTGGTAGTCTG CTTGGAGAAAATTATATTGAGGTTTTGAAGATGGGGTTCCTTATGAATTGGACTGCTCATAATTGTAGCACTTGTGAGAGCAGTGGTGGGCGTTGTGGAT TTGAGAATAATGAATTCATTTGTTTTTGCCGTGATCGGCCTCGTCTCAAATCTTGTGATGCTGGTTCTAGTCTTAATGTCAGACGGAAGATTATTATTAT TATTGGTGTTGTCTCTGGATCAGCAGGAATTTTATTCATCTGCGTGATTCTTTATTCCAGAAGGAAGGCCTCATCAACTACCACTCCTATTTTTCTAAAG AAGAAACATAATCAACATCTTGAGGTTTTCATAAGAAACCACGGACCACTAGCACTGAAAAGATATAATCTGTCGGATGTTAAGAAAATGACCAATTTTT TCAAAGATAAACTTGGTCAAGGAGGCTATGGAATTGTTTACAAAGGAAAGCTACAGGATGGCCATCTGGTGGCAGTGAAGGTCATGCAAGCTTCAAAAGG GGATGGGGAAGAATTCATAAATGAGGTTGCAAGCATCAGTAGAACTTCCCATGTCAATATTGTCACTCTACTGGGATTTTGTTTGGAGGGTGACAAAAGA GTTCTCATTTATGACTTCATGGTCAATGGATCGCTTGAAAAGTTCATAAATCATGAAAATGCTTTGCAAGCCAATCAACAGCTGGGATGGAATAAATTGT ACCAGATTTTAGTTGGCGTTGCTCGAGGGCTTGAGTATTTGCATCGAGGGTGCAATACAAGGATCGTGCATTTTGACATTAAGCCTCATAACATTCTTCT TGATGCAGATTTTTCCCCTAAGATATCCGACTTTGGACTTGCGAAGCCATGCACTAGGAAGGAGAGCAATGTATCGCTATTGGAGGCAAGAGGAACCATT GGATATATAGCACCAGAAGTGTTCAGTAGAAACTTTGGACAAGTTTCACACAAGTCCGATGTCTATAGTTATGGAATGATGGCTCTAGAAATTGTTGGAG GACGAAAGAATCATGAAGCTGAAATGAGTTCCAGTAGCGAAAAATATTTTCCAGACTGGATTTATAGGCATCTTGAGCTAGATGATGAGTTTGAATTGAA TGGCGTGACAAATGCAGAACAATCTGACATTATGAGGCAAATAGCAATAGTTGGCTTGTGGTGCATCCTCACAAATCCATCTGATAGACCATCCATGAGA AAAGTGATAGAAATGTTGGAAGGACCTCTTGGAGCATTGAAGATTCCACCGAAGCCTCGCCTGTATTCTCCTCCAAGATTACTTTCATATTCATCTACTA CATCATTAACATGA
AA sequence Show only first row Show all	>Potri.015G045200.1 pacid=42775046 polypeptide=Potri.015G045200.1.p locus=Potri.015G045200 ID=Potri.015G045200.1.v4.1 annot-version=v4.1 MDPNKSFAFRKLLSIYNCIFLFTYLATQTVSQHPKFKSCELKNCGAGPNISYPFWLSQEQEPFCGHPNFMLTCSDKRPALTISNDVYIIKDISYATNSMR VANAAVYEETCPPLLHNISLDRTPLTISPGYTNFSFFYNCTLKPEDYYTLYAISCATNSTHYSIAGFHLEEIEMRSNYSLNSCHDFANAPIHTGEDIGSL LGENYIEVLKMGFLMNWTAHNCSTCESSGGRCGFENNEFICFCRDRPRLKSCDAGSSLNVRRKIIIIIGVVSGSAGILFICVILYSRRKASSTTTPIFLK KKHNQHLEVFIRNHGPLALKRYNLSDVKKMTNFFKDKLGQGGYGIVYKGKLQDGHLVAVKVMQASKGDGEEFINEVASISRTSHVNIVTLLGFCLEGDKR VLIYDFMVNGSLEKFINHENALQANQQLGWNKLYQILVGVARGLEYLHRGCNTRIVHFDIKPHNILLDADFSPKISDFGLAKPCTRKESNVSLLEARGTI GYIAPEVFSRNFGQVSHKSDVYSYGMMALEIVGGRKNHEAEMSSSSEKYFPDWIYRHLELDDEFELNGVTNAEQSDIMRQIAIVGLWCILTNPSDRPSMR KVIEMLEGPLGALKIPPKPRLYSPPRLLSYSSTTSLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.015G045200 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.015G044875 [exp]	1.00	0.9841
AT1G18390			Protein kinase superfamily pro...		Potri.015G045101 [exp]	2.44	0.9612
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.003G046700 [exp]	2.82	0.9672
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063900 [exp]	3.46	0.9675
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.003G131300 [exp]	3.46	0.9676
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375400 [exp]	3.74	0.9596
AT3G61670			Protein of unknown function (D...		Potri.001G093900 [exp]	5.38	0.9469
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Potri.003G088300 [exp]	7.34	0.9573
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	10.00	0.9569
AT5G03880			Thioredoxin family protein (.1...		Potri.006G213000 [exp]	12.04	0.9652

Compare expression of checked genes

Potri.015G045200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.