Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73805 413 / 2e-141 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G57580 342 / 6e-111 Calmodulin-binding protein (.1) AT4G25800 329 / 1e-106 Calmodulin-binding protein (.1.2) AT2G18750 328 / 3e-106 Calmodulin-binding protein (.1.2.3) AT4G31000 296 / 2e-94 Calmodulin-binding protein (.1.2) AT2G24300 288 / 1e-90 Calmodulin-binding protein (.1.2) AT5G62570 282 / 1e-89 Calmodulin binding protein-like (.1.2) AT5G26920 215 / 2e-63 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G054900 [exp] 697 / 0 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.018G095300 [exp] 337 / 5e-109 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 336 / 9e-109 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.004G035100 [exp] 335 / 1e-108 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 324 / 2e-104 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 312 / 5e-100 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.015G071800 [exp] 309 / 2e-99 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 303 / 3e-97 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.018G111200 [exp] 303 / 1e-96 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011248 [exp] 347 / 8e-113 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 346 / 1e-112 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 325 / 1e-104 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10001436 [exp] 324 / 3e-104 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10019056 [exp] 303 / 3e-96 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10036301 [exp] 301 / 2e-95 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 281 / 7e-89 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10020686 [exp] 258 / 5e-79 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029861 [exp] 254 / 6e-78 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10043463 [exp] 234 / 2e-69 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [poplar] [flax] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Potri.015G045300.1 pacid=42775689 polypeptide=Potri.015G045300.1.p locus=Potri.015G045300 ID=Potri.015G045300.1.v4.1 annot-version=v4.1 ATGGCGGCCAAACGTTTTCTTGATGAACAGGATTCGGACTTGGATCAGCCAGTGGATCAGAAACGAATGAGAACTAGACCTTCCTTCGCTTCGGTGATTG GAGAAGCAGTAATGATGAATTCCTTAAAGAATTTATGTTTTTCCTTAGAGCCAATGATCAGGAGAGTGGTGAATGAAGAGGTGGAGGGCAGTTTAAGGCG TTCAACATGCTCTTTGACTAGATCATCGTCGTTGCAAATCAAAGCCCTTGAAGCATCTAGTCTACAACTAATGTATAGCAAGAGTCTCCTGCTCCCTATA TTCACAGGGAGCAAAATAGTTGATCTTGATAGTTCTCCCCTGCAAATCCTTCTTGTAGACACGAGGGGTGATCAAATGGTGCCGACATATCTCCCTCACC CGCTCAAGATTGAAGTTGTGGTTCTCGATGGAGATTTCCCTTCGAATGGTAGCAGCAAGTGGACAAGTGAAGAATTCGACAGCAATATTGTGAAGGAGAG AACAGGCAAGCGACCTTTGCTCGCCGGAGATTGCTTAACGGTCACTCTACGGGATGGATTTGCACCCATTGGAGAGATTGAGTTCACGGACAACTCGAGC TGGATCAGGAGCAGGAAATTCAGGCTCGGTGCAAGAGTAGCTCCGGGGAGCTACCAAGGGGTTAAAATCCGTGAAGCAATCACCGAAGCTTTTGTTGTCA AAGATCACCGTGGAGAATTGTACAAGAAGCATCATCCACCAATGCTACAAGACGAAGTTTGGCGACTTGAGAAGATAGGGAAAGATGGAGCTTTCCACAG AAAGCTAACCGCCGAGGGTATTAACACCGTGCAAGACTTCTTGAAGTTGTCTGTTGTCGACCGACAGAAACTCAGGAGGATTTTAGGCCCTGGGATGTCT GAGAAAATGTGGGAAGTTACAATAAAACATGCGAGGACTTGTGATCTGGGGAACAATCATTTTATTTTTCGCCGCCCCAATTGCACCATCACCTTAAACC CTATATGTCAAATCGTGCACGCCATGATCGATGGGAATTCATACTCCAACAAGGAGCTTGCAAGCATAAGGGGTTATATCGAGACTTTGGTGAGACACGC GTATGCAGAATGGAACTCTTTGGAGGAGGTTGCTGGAGTTCCAAGTGACAGTACTCCTCTGCTCACTCAAGGTGAGCCAGTGGATCAGTACCTGAATCAG CATCAGACGACTGTGAAATCATTTCCACCACTTGGGTATTCAACTGATCATAATAGATACCTTGAGATGGGGAACGTGCCAAGCAATGCATACAACAACT GGAAAATAACTTCAAATTACTATCATGGCGCAGCAGTTGAACAGGGAATCCAGTATAGCATCTCGGAGTCGTCATCAGATGGTGAAATAACATCCAAGTC CTACATCAATGGCGATCGATAG
AA sequence Show only first row Show all	>Potri.015G045300.1 pacid=42775689 polypeptide=Potri.015G045300.1.p locus=Potri.015G045300 ID=Potri.015G045300.1.v4.1 annot-version=v4.1 MAAKRFLDEQDSDLDQPVDQKRMRTRPSFASVIGEAVMMNSLKNLCFSLEPMIRRVVNEEVEGSLRRSTCSLTRSSSLQIKALEASSLQLMYSKSLLLPI FTGSKIVDLDSSPLQILLVDTRGDQMVPTYLPHPLKIEVVVLDGDFPSNGSSKWTSEEFDSNIVKERTGKRPLLAGDCLTVTLRDGFAPIGEIEFTDNSS WIRSRKFRLGARVAPGSYQGVKIREAITEAFVVKDHRGELYKKHHPPMLQDEVWRLEKIGKDGAFHRKLTAEGINTVQDFLKLSVVDRQKLRRILGPGMS EKMWEVTIKHARTCDLGNNHFIFRRPNCTITLNPICQIVHAMIDGNSYSNKELASIRGYIETLVRHAYAEWNSLEEVAGVPSDSTPLLTQGEPVDQYLNQ HQTTVKSFPPLGYSTDHNRYLEMGNVPSNAYNNWKITSNYYHGAAVEQGIQYSISESSSDGEITSKSYINGDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.015G045300 [exp]	0	1
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.012G054900 [exp]	1.00	0.9963	CBP60.6
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	1.41	0.9877
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Potri.013G090400 [exp]	3.00	0.9855
AT5G08350			GRAM domain-containing protein...		Potri.004G068000 [exp]	4.89	0.9853
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091500 [exp]	4.89	0.9707
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.011G007800 [exp]	5.19	0.9768	Pt-WRKY42.1
AT5G24110	WRKY	ATWRKY30, WRKY3...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.012G031700 [exp]	6.92	0.9809
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Potri.013G103300 [exp]	7.07	0.9766
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	8.83	0.9700
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	11.31	0.9784

Compare expression of checked genes

Potri.015G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.