Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 353 / 7e-120 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 352 / 5e-119 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 344 / 3e-116 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 332 / 3e-111 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 330 / 6e-111 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 330 / 8e-111 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 320 / 9e-107 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 295 / 8e-97 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 295 / 3e-94 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121800 [exp] 463 / 4e-163 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 358 / 1e-121 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 347 / 2e-117 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 343 / 4e-116 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 343 / 5e-116 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 342 / 1e-115 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 342 / 2e-115 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 336 / 7e-113 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G123500 [exp] 327 / 4e-111 AT1G68380 254 / 1e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036610 [exp] 427 / 2e-148 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 426 / 6e-148 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10034349 [exp] 380 / 5e-129 AT1G68390 387 / 3e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031958 [exp] 375 / 1e-127 AT1G68390 403 / 2e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035145 [exp] 349 / 2e-119 AT1G68390 393 / 6e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 348 / 9e-118 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 348 / 9e-118 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 348 / 2e-115 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 335 / 2e-112 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 332 / 2e-111 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.015G045400.1 pacid=42775906 polypeptide=Potri.015G045400.1.p locus=Potri.015G045400 ID=Potri.015G045400.1.v4.1 annot-version=v4.1 ATGAAGGATACCGACGATCAGCAGCTACGCCCACAAACCTCATGGAAGCTCCAAGTGCACCTCCAGAACTTCATCTTCTATTTGCTGGTCTTTGGCTGTG GCTTAGCCTTTGGTATCGCACGCACTTCCTATATCAGAGACATTTCTTTCAACTTTCAACTCGACCAATTCTCTAACAATCGAACCAACACCTCCCTATC CAACTCCTCCTCATCTCCTCCCTTCATTACAATCGACAGAAACAGAACTGGCCGAATCGGACTCGAAGAATTCTTGAGAGCGCCTAACGTTTCCCATGAT ATGAACGAGGAAGAGTTGTTATGGAGAGCATCAATGGTTCCTCGTCTACCCAATTATCCGTTCCAGCTAGTCCCCAAGGTTGCCTTCTTGTTCTTGACCA AAGGGCCTTTGCCTTTGGCTCCGTTGTGGGACTTGTTCTTTAAAGGGCATCAAGGGCTTTATTCAATTTTTGTGCATTCCAATCCATCCTTCAATGGAAA TTATACAGAAGAGGAAGATTCTGTGTTTCGTGGCAGGAAGATCCCAAGCAAGGAGGTACAGTGGGGAAAGTTTTCAATGGTGGAAGCAGAGCGTCGTTTA CTAGCTAATGCTCTACTGGACTTCTCAAATCAACGTTTTGTTCTCCTATCAGAATCATGCATTCCCTTATTCAACTTCTCAACCATCTACAGTTACTTAA TGGGCTCAACAACAACATTCATCGAGGTTTACGATTTACCCGGCCCCGTTGGCCGCGGCCGATACAACCATAGAATGAGGCCTGTAATTCAGCTCGACAA ATGGCGAAAAGGCTCCCAGTGGGTCGAGATGGACCGTCAGCTTGCGGTGGAGGTAGTATCCGACCGCAAATATTTTCCAACTTTTCGGAAATTTTGCAAA GTCTCTTGCTACAGTGATGAGCACTATTTGCCAACATTTGTTAACATGAAGTCTCGGAAGAAAAATTCAAACAGGAGTTTAACATGGGTTGACTGGTCAA GGGGAGGACCTCATCCTCGTAAATTTGGGAGACTGGATATTACTGTTGATTTTTTGGAGAGGTTGAGAAAATGGAGGCGATGTGAGAACAATGGAAGATG GACTAATATTTGCTACTTGTTTGCAAGAAAGTTCACTCCTGCTGCTCTGGATAGGTTGATGAGATTTGCTCCGAAGGTCATGCAATTTTAG
AA sequence Show only first row Show all	>Potri.015G045400.1 pacid=42775906 polypeptide=Potri.015G045400.1.p locus=Potri.015G045400 ID=Potri.015G045400.1.v4.1 annot-version=v4.1 MKDTDDQQLRPQTSWKLQVHLQNFIFYLLVFGCGLAFGIARTSYIRDISFNFQLDQFSNNRTNTSLSNSSSSPPFITIDRNRTGRIGLEEFLRAPNVSHD MNEEELLWRASMVPRLPNYPFQLVPKVAFLFLTKGPLPLAPLWDLFFKGHQGLYSIFVHSNPSFNGNYTEEEDSVFRGRKIPSKEVQWGKFSMVEAERRL LANALLDFSNQRFVLLSESCIPLFNFSTIYSYLMGSTTTFIEVYDLPGPVGRGRYNHRMRPVIQLDKWRKGSQWVEMDRQLAVEVVSDRKYFPTFRKFCK VSCYSDEHYLPTFVNMKSRKKNSNRSLTWVDWSRGGPHPRKFGRLDITVDFLERLRKWRRCENNGRWTNICYLFARKFTPAALDRLMRFAPKVMQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68390			Core-2/I-branching beta-1,6-N-...		Potri.015G045400 [exp]	0	1
AT3G27030			unknown protein		Potri.015G098200 [exp]	2.82	0.8905
AT2G20560			DNAJ heat shock family protein...		Potri.007G135800 [exp]	3.00	0.8932
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Potri.015G120300 [exp]	7.48	0.9031
AT3G05620			Plant invertase/pectin methyle...		Potri.013G013200 [exp]	10.95	0.8996
AT2G27300	NAC	NTL8, ANAC040	Arabidopsis NAC domain contain...		Potri.009G161300 [exp]	22.58	0.8793
AT3G48660			Protein of unknown function (D...		Potri.003G170400 [exp]	23.76	0.8832
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	25.37	0.8715
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013900 [exp]	30.33	0.8624
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	30.98	0.8696
AT4G31980			unknown protein		Potri.013G146600 [exp]	31.17	0.8569

Compare expression of checked genes

Potri.015G045400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.