Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48760 870 / 0 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT1G60070 118 / 6e-27 Adaptor protein complex AP-1, gamma subunit (.1.2) AT5G22770 109 / 4e-24 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 108 / 6e-24 Adaptor protein complex AP-2, alpha subunit (.1) AT1G31730 108 / 8e-24 Adaptin family protein (.1) AT1G23900 89 / 6e-18 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G23940 70 / 5e-12 ARM repeat superfamily protein (.1) AT4G31490 47 / 8e-05 Coatomer, beta subunit (.1) AT4G31480 46 / 0.0002 Coatomer, beta subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G055000 [exp] 1551 / 0 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.016G104700 [exp] 122 / 4e-28 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 121 / 6e-28 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G235200 [exp] 113 / 2e-25 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.004G189700 [exp] 110 / 2e-24 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 104 / 2e-22 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.006G273300 [exp] 46 / 0.0002 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.001G101400 [exp] 45 / 0.0004 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.018G007400 [exp] 44 / 0.0006 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036002 [exp] 1129 / 0 AT1G48760 917 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Lus10016706 [exp] 1115 / 0 AT1G48760 914 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Lus10035684 [exp] 114 / 1e-25 AT1G31730 1312 / 0.0 Adaptin family protein (.1) Lus10035683 [exp] 114 / 1e-25 AT1G31730 1343 / 0.0 Adaptin family protein (.1) Lus10037271 [exp] 113 / 3e-25 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10020522 [exp] 112 / 8e-25 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10037272 [exp] 111 / 2e-24 AT1G31730 1341 / 0.0 Adaptin family protein (.1) Lus10005371 [exp] 109 / 5e-24 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10012988 [exp] 106 / 5e-23 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10019520 [exp] 103 / 4e-22 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Potri.015G045600.1 pacid=42774973 polypeptide=Potri.015G045600.1.p locus=Potri.015G045600 ID=Potri.015G045600.1.v4.1 annot-version=v4.1 ATGGCATCTCCTTCTCTTATGGACACCCTTTTTCAACGCAGTTTAGATGACATCATCAAAGGTGTTCGCCAACAACAAAGTAGTACTGAATCCATTTTCA TATCCAAAGTTATTGAAGAAATCCGTCGAGAAATCAAATCCACTGACTTGCGAACCAAATCCACTGCCCTTCAAAAACTCACTTACCTGAATTCAATCCA CTTTATTGACATGTCATGGGCATCTTTTCATGCTATTGAATGCATTTCTTCTCCTACTTTCTCTCACAAAAAGATTGGTTATCTAGCGATCTCTCAGTCT TTCAATGAATCCACACCCGTTATTTTGTTGATTAGTAATCAACTAAGGAAGGATCTCAAGAGTAGCAATGAGTTTGAGGTGAGTTTAGCTCTTGATTGCT TATCTAGAATTGGAACTGTAGATTTATGTAGAGACCTTACGTCTGAGGTTTTCACTTTGATGTCTAGTTCTAAAGTTTTTGTTAGAAAGAAAGGTATAGG TGTTGTTTTAAGGCTTTTTGAGAAATACCCAGATGCAGTTAGGGTGTGTTTTAAGAAACTTGTTGAGAGTTTAGAGGGTAGTGATTCGCAAATTGTGTCT GCAGTTGTTGGTGTGTTTTGTGAGCTTGCTTCCAAAGACCCCAGATCGTATCTTCCATTGGCACCTGAGTTTTATAGGATTTTGGTTGATTCGAAGAATA ATTGGGTGTTGATTAAGGTGTTAAAGATTTTTGCTAAGTTGGCTCCTTTAGAGCCTAGGTTGGCTAAAAGGATGGTTGAACCAATTTGTGATCATATGAG AAAGACCGGGGCGAAGTCTTTGGTGTTTGAGTGTATTAGGACTGTAGTCACTAGCTTCACTGAGTATGAATCTGCGATGAAGCTTGCAGCTGCAAAAATT CGTGAGTTTTTGATGGAGGATGATCCAAATCTTAAGTATCTTGGACTGCATGCCGTATCTATTATGGCGCCAAAGCACTTGTGGGCAGTTTTGGAGAATA AGGATGTGGTGATCCAGTCTTTGAGTGATGAAGATCCTAATATTAAACTCGAGTCTTTGCGTCTAGTTATGGCAATGGCTTCAGAGAGCAATTTAGTGGA AACTTGCAGGGTTTTGGTTAATTATGCACTCAAATCTGACCCTGAGTTCTGCAATGAAATTCTTGGTTCAATTTTATCAACATGCTGCCGGAACGTTTAT GATGTTATAATTGACTTTGATTGGTATGTGTCACTTCTTGGGGAAATGTCAAGGATTCCAAATTGCTCGAAGGGGGAAGAAATTGAGAATCAGCTAATTG ATATAGGTATGAGAGTCAAGGATGTTAGGCCAGAGCTTGTTCGTGTTGGCCGTGACTTGCTGATTGATCCAGCACTACTTGGCAATCCTTTTCTGCATCG GCTGTTATCTGCTGCTGCTTGGGTGTGTGGGGAATATGTAGAGTTCTCGAGGAACCCAGTTGAACTTATGGAGGCATTGCTACAGCCTCGTACTAGTCTC CTGCCTTCGTCAATAAGAACAGTTTACATGCAGTCTGCTTTTAAAGTCTTAATCTTTTGTATACATTCTTACTTTTTGCAAAAGGAAGAAATGACCTCAG AAGTTTCAGATTTGGCTTCTAAAAGGGAATGCTCAGAAAGTTCTGATTTAGCAACAGGCAAAGCTCTTGTCCAAAGTGATCAGGATGAAGGGTTCAATCC AAGGGAATCAAACCAATCATATGAAGATCCTTCTGTTGTAGATACTGGGGTTGGACAGACATCTACACCCGCATTCATGGAGGAAAAAAGTTTTATGCAT GAATCTATTGTTAACCTGTTAAACCTGATGGAATTGGCGTTGGGTCCTTTATCAGGCAGCCTTGATGTTGAAATACAGGAGAGAGCATGGAATGTGCTTG GATTTATTGAGTTGGTACGACAAGAATTTTCTAATCCATTGATTCGAAAGGAAGCAAATTTGGAGAGGGAAAAAGTGATTGCTTCCAGAGTTGTTGAATG GGTGCATGATGCCTTCTCTGAGGAGCTTGGTCCGGTCTCCGTAACTGCCCAGGATAGAGTCCTTGTACCAGATGAACTAGTGCTTAAGGAGAATCTCACT GACTTGGAAGCAATCTGTGGAGGTGTAGAATTACCTTCACCCGGTTCCTTTTCTCTTACAAGTCCATATTATGGAGAAAGTGCTGGTTTTTCCGTCTCTA ACCTCCAAGGCGAAGAAGATTCAGAACCATCAACAGAGTCCACTTCCTTGCTTACAGAACACCGAAAGCGGCATGGGTTGTATTATCTCCCTTCAGAAAA GAATAAAATTCTTGCAAATGATTACCCCCCTGCCAATGACCCTAGTTCTGGCATTAACACGAATGATGACACTGAAGATTTAGTTAAGCTTGCAGACCAA TCACTAGTCTCCAAGAGAAAGCCAAACCATGCAAAACCTAGGCCTGTGGTGGTGAAGTTGGAAGGAGGAGATGCAGCACCTGTCGTTTCCAAGAAACCAG AGCTGAAGGATGATTTACTTTCTGGCGCCATTCGTGATGTACTTTTAGGTAATGAAGCCAAAGCTGCCTCATCACAAAGTAATCCATCTGATAAGTCATC CAGTAAGAGAAAAGGGAAGGCGAAACATGTTATTCTACCTGATTCTAAAGAAAATCTAGCTGTCGGAGAACAGCCCAATCATGAAAATCCAAGTTCAAGG CGAAGCCAACACCGGGGTCATGGTAAAGAGAAAAGCAAGAAAAGTCGAGGGAAGAAGAATGGGGATGGAAGGGAAGATGATGGGGAGAAAGAAAGAGAGA AGATTAGAGATCACCATGGTAGACACAAAAGTCGACAAAGAGCTGATGCACCTATAAATGTGGTTGCACAAACACCGGATATTCCTGATTACCTTTTATA G
AA sequence Show only first row Show all	>Potri.015G045600.1 pacid=42774973 polypeptide=Potri.015G045600.1.p locus=Potri.015G045600 ID=Potri.015G045600.1.v4.1 annot-version=v4.1 MASPSLMDTLFQRSLDDIIKGVRQQQSSTESIFISKVIEEIRREIKSTDLRTKSTALQKLTYLNSIHFIDMSWASFHAIECISSPTFSHKKIGYLAISQS FNESTPVILLISNQLRKDLKSSNEFEVSLALDCLSRIGTVDLCRDLTSEVFTLMSSSKVFVRKKGIGVVLRLFEKYPDAVRVCFKKLVESLEGSDSQIVS AVVGVFCELASKDPRSYLPLAPEFYRILVDSKNNWVLIKVLKIFAKLAPLEPRLAKRMVEPICDHMRKTGAKSLVFECIRTVVTSFTEYESAMKLAAAKI REFLMEDDPNLKYLGLHAVSIMAPKHLWAVLENKDVVIQSLSDEDPNIKLESLRLVMAMASESNLVETCRVLVNYALKSDPEFCNEILGSILSTCCRNVY DVIIDFDWYVSLLGEMSRIPNCSKGEEIENQLIDIGMRVKDVRPELVRVGRDLLIDPALLGNPFLHRLLSAAAWVCGEYVEFSRNPVELMEALLQPRTSL LPSSIRTVYMQSAFKVLIFCIHSYFLQKEEMTSEVSDLASKRECSESSDLATGKALVQSDQDEGFNPRESNQSYEDPSVVDTGVGQTSTPAFMEEKSFMH ESIVNLLNLMELALGPLSGSLDVEIQERAWNVLGFIELVRQEFSNPLIRKEANLEREKVIASRVVEWVHDAFSEELGPVSVTAQDRVLVPDELVLKENLT DLEAICGGVELPSPGSFSLTSPYYGESAGFSVSNLQGEEDSEPSTESTSLLTEHRKRHGLYYLPSEKNKILANDYPPANDPSSGINTNDDTEDLVKLADQ SLVSKRKPNHAKPRPVVVKLEGGDAAPVVSKKPELKDDLLSGAIRDVLLGNEAKAASSQSNPSDKSSSKRKGKAKHVILPDSKENLAVGEQPNHENPSSR RSQHRGHGKEKSKKSRGKKNGDGREDDGEKEREKIRDHHGRHKSRQRADAPINVVAQTPDIPDYLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.015G045600 [exp]	0	1
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	1.73	0.8362
AT4G35890			winged-helix DNA-binding trans...		Potri.005G109400 [exp]	4.89	0.7848
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.012G055000 [exp]	4.89	0.7801
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	5.47	0.7743
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.019G104400 [exp]	6.08	0.7114
AT5G20600			unknown protein		Potri.012G036500 [exp]	9.79	0.8048
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	10.81	0.7564
AT3G58050			unknown protein		Potri.016G060200 [exp]	13.96	0.7514
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	14.00	0.7550
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.019G095700 [exp]	20.00	0.7623

Compare expression of checked genes

Potri.015G045600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.