Plant FIBer expression Database

Potri.015G045700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48780 107 / 8e-28 unknown protein
AT3G18300 96 / 2e-23 unknown protein
AT1G68330 77 / 1e-16 unknown protein
AT1G67050 54 / 2e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G055300
[exp]
314 / 6e-109 AT1G48780 105 / 2e-27 unknown protein
Potri.008G122300
[exp]
134 / 3e-38 AT1G68330 134 / 6e-38 unknown protein
Potri.010G122800
[exp]
127 / 2e-35 AT1G68330 136 / 7e-39 unknown protein
Potri.017G115700
[exp]
100 / 3e-25 AT1G67050 112 / 6e-30 unknown protein
Potri.004G098700
[exp]
97 / 5e-24 AT1G67050 117 / 6e-32 unknown protein
Potri.007G042600
[exp]
41 / 0.0002 AT5G66800 121 / 4e-35 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009004
[exp]
92 / 1e-21 AT1G48780 98 / 7e-24 unknown protein
Lus10009633
[exp]
91 / 3e-21 AT1G48780 93 / 5e-22 unknown protein
Lus10034341
[exp]
70 / 1e-13 AT1G68330 117 / 4e-31 unknown protein
Lus10041430
[exp]
66 / 2e-12 AT1G68330 111 / 4e-29 unknown protein
Lus10009160
[exp]
48 / 3e-06 AT1G67050 152 / 1e-44 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G045700.1 pacid=42774757 polypeptide=Potri.015G045700.1.p locus=Potri.015G045700 ID=Potri.015G045700.1.v4.1 annot-version=v4.1
ATGTGCTCGGAAACAAGCCCTCGAACATCTTTCTCTAATGATCTTGTCCAAGAAAATGACAGAGAAACTGAGCAAGTGTCAAGAAGGGACACTACATTAC
TGGACTCAAATTCTGATTTTGAGTTCAGTATTTGCAGTAATTTAGGCCATGAATCTTCTCCGGCAGACGATCTTTTCGCAGATGGCATGATCCTGCCAGT
TCAAATTCAAGAAAGAATTACTGCCTCCAAGGAAATATACAGACATGAATCGCCACGAAGAGCTTCACTTCCTCCTCTTCCATCTCCTCCTCCAAATGAG
AATTTAACTAAAGATAGCATGAGAGAGTTAATGGTTGTGAATTCTGATCACTTTGAGGGAAAGCCTCAGTCCAAGTCTTTCTGGGGATTCAAGAGAAGCA
GTAGTCTGAATTATGATATCAAGAGAAGCCTATGCTCATTAACACTTTTGTCACGAAGCAACTCAACAGGTTCTGTGCCAAATTCAAAGAGAACAACATT
GAAGGACACGCACAAGAGCAATTCACAGAAGCAACAATCAACTGCCATGGAAAAGTCTGCATCATCATCATCATCTTCTTCGGTGTCTAGTTTAGTGTAT
TCATTACCACAAAAGCCTCCATTGAAGAAGAGTGGATATTATGGTAAGATTAGTCCAGTCTTGAATGTTCCACCTCCTTACATTTATAAAGGAGCTGCAA
ATCTCTTTGGTCTGGGATCCTTTTTGCGCAATGGAAAGGAAAAGAAGATCAGAAAGTGA
AA sequence
>Potri.015G045700.1 pacid=42774757 polypeptide=Potri.015G045700.1.p locus=Potri.015G045700 ID=Potri.015G045700.1.v4.1 annot-version=v4.1
MCSETSPRTSFSNDLVQENDRETEQVSRRDTTLLDSNSDFEFSICSNLGHESSPADDLFADGMILPVQIQERITASKEIYRHESPRRASLPPLPSPPPNE
NLTKDSMRELMVVNSDHFEGKPQSKSFWGFKRSSSLNYDIKRSLCSLTLLSRSNSTGSVPNSKRTTLKDTHKSNSQKQQSTAMEKSASSSSSSSVSSLVY
SLPQKPPLKKSGYYGKISPVLNVPPPYIYKGAANLFGLGSFLRNGKEKKIRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48780 unknown protein Potri.015G045700
[exp]
0 1
AT1G63910 MYB AtMYB103 myb domain protein 103 (.1) Potri.003G132000
[exp]
1.00 0.9605
AT5G67450 C2H2ZnF AZF1 zinc-finger protein 1 (.1) Potri.017G091800
[exp]
2.82 0.9290
AT4G33080 AGC (cAMP-dependent, cGMP-depe... Potri.006G224800
[exp]
2.82 0.9309
AT2G27060 Leucine-rich repeat protein ki... Potri.004G197500
[exp]
5.29 0.9256
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.001G320800
[exp]
5.74 0.9306 PtrFLA14-8,FLA14.8
AT5G46330 FLS2 FLAGELLIN-SENSITIVE 2, Leucine... Potri.011G068500
[exp]
6.00 0.9183
AT5G16730 Plant protein of unknown funct... Potri.019G047600
[exp]
6.92 0.9267
AT5G42350 Galactose oxidase/kelch repeat... Potri.002G007700
[exp]
8.83 0.9023
AT3G60580 C2H2ZnF C2H2-like zinc finger protein ... Potri.001G157700
[exp]
9.79 0.9255
AT4G21380 ARK3 receptor kinase 3 (.1) Potri.011G035600
[exp]
11.87 0.8888

Potri.015G045700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.