Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18370 967 / 0 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT1G05500 94 / 1e-19 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 89 / 5e-18 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 81 / 3e-15 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G53590 74 / 4e-13 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G20080 67 / 3e-11 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G03370 66 / 9e-11 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT3G57880 65 / 1e-10 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 65 / 2e-10 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G22610 64 / 3e-10 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056000 [exp] 1445 / 0 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.006G063900 [exp] 90 / 2e-18 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 88 / 7e-18 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 88 / 8e-18 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G379800 [exp] 72 / 1e-12 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 68 / 1e-11 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G058900 [exp] 66 / 9e-11 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 65 / 2e-10 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.004G043000 [exp] 64 / 3e-10 AT3G57880 988 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009032 [exp] 1172 / 0 AT3G18370 907 / 0.0 C2 domain-containing protein (.1) Lus10009672 [exp] 1112 / 0 AT3G18370 840 / 0.0 C2 domain-containing protein (.1) Lus10006193 [exp] 89 / 7e-18 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 78 / 1e-14 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10031816 [exp] 77 / 2e-14 AT4G11610 513 / 1e-176 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10013710 [exp] 76 / 9e-14 AT1G53590 817 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005578 [exp] 75 / 2e-13 AT1G53590 812 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10031244 [exp] 74 / 4e-13 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10026192 [exp] 71 / 2e-12 AT1G53590 771 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042475 [exp] 71 / 2e-12 AT3G14590 741 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.015G046700.1 pacid=42776658 polypeptide=Potri.015G046700.1.p locus=Potri.015G046700 ID=Potri.015G046700.1.v4.1 annot-version=v4.1 ATGGGAAGAAGAAAGGGTAGGGCCGGTTTCAAAGTTAAAGAGCTTTTGGAGTTCTTTAATCATCTCTTGGAGGAAAAGCCCTCCATTGCTTTCTTAATCC CCTTGCTTTTGGTTTGCTGGGGTATTGAGAAATGGGTTTTCTCTTTCTCCAATTGGGTTCCTCTTGTCGTCGCTATCTGGGCTACTTTTCAGTATTGCAG TCATCAACAGAGACTTCTTGTGGAAGACCTAAACAAGAAGTGGAAGCGAGTTGTATTGAACACCTCGCCAATTACGCCATTGGAACACTGTGAGTGGATG AACAAGCTGTTGATGGAAATTTGGACCAGCTATATGAACCCAAAGCTTGCAACAAGATTCTCATCCATTGTTGAGAAACGTTTAAAACAACGTAGGTCGA AGCTCATCGAAAAAATTGAGTTGCAGGAATTTTCACTTGGTTCATGCCCACCTTATCTGGGTCCACATGGGACTTGTTGGTCAACTTCAGGTGATCAGCG AATTATGAATTTGGGTTTCGATTGGGACACCAGTGACATGAGCATTTTGTTGCTGGCTAAGCTGGCAAAACCATTAATGGGAACTGCTCGAATTGTTATA AACAGCCTCCACATCAAGGGTGAGCTTCTCTTGATGCCAGTTCTGGATGGGAGAGCAGTTTTGTACTCATTTGTGTCAACTCCTGAAGTAAGAATAGGAG TTGCTTTTGGAAGTGGAGGAAGCCAGTCACTACCTGCCACAGAGCTGCCCGGCGTTTCTTCTTGGCTGGTCAAGGTTTTAACTGACACCTTAGTTAAGAC AATGGTTGAGCCTCACCGTCGTTGTTACTGTTTACCAGCAGTAGATTTAAGGAAAAAGGCTGTTGGTGGAATTGTATATGTGTCAGTCATCTCAGCTAGA AAACTTTCTAGAAGTAACCTGAGAGGAAGCCCACCAAGAAGGGAACAAAGTCATTCGTTAAATGGTAGTTTGGTAGAGCATTTTGATGATGAAGATCTGC GAACATTTGTGGAGGTCGAACTTGGACAGTTAACAAGGAGAACAGAAGTGAGACTAGGCTCAAGCCCTAGATGGGATTCAACATTTAACATGGTCTTACA TGAAGATACAGGAACTCTTCGATTACATCTTTACAACTGCCCACCCAACAGTGTGAAGTATGATTATCTAGCAAGTTGTGAGATCAAGATGAAGTATGCT GCAGATGATTCAACAGCGTTTTGGGCAATTGGACCTGACTCTGGTGTAATTGCCAAACATGCTGAGTTTTGTGGAAACGAAGTTGAAATGGTGGTTCCAT TTGAGGGAGTTACTTCAGGAGAGTTGACTGTCAAGCTTGTAGTAAAAGAATGGCAGTTCTCTGATGGTTCCCTTAGCTTGAACAAGTTCAATGTTAGCTC TCTGAAGTCGATGTATGGATCATCAAATCTTCTTTCAAGAACAGGAAGGAAGATTAATGTGGCTATCATGGAGGGAAAAGATCTGATTTCAAAAGAAAGA TCTGGAAAGTGTGATCCATATGTTAAACTGCAGTATGGAAAGGTCCTACAGAAAACACGGACTGCACACAATTCTAATCCTTTCTGGAATCAAAAGTTCG AATTTGATGAGATAGTAGATGACGGATGCCTTAAGATTAAATGCTACAGCGAAGAAATCTTTGGAGATGAAAACATTGGTAGTGCACGAGTAAATTTAGA AGGTTTGCTGGAGGGATCAATCCGGGACATATGGGTTCCCCTTGAAAGAGTGAATTCAGGAGAATTAAGGCTTCAAATAGAAGCAGTCAGAGTCAATGAC TCTGAAGGATCACGGGGTTCTGTCTCAGGTTCATTCAATGGTTGGATTGAACTTATCCTTGTTGAAGCAAAAGATCTTATTGCTGCTGATCTTAGAGGGA CAAGTGATCCATATGTGAGGGTACAGTATGGAAGCTTGAAGAAGAGAACAAAGGTTATGTACAAAACTCTGAATCCTCAATGGAATCAGACCTTGGAGTT CCCTGATGATGGCAGTCCCTTAGAGTTGCATGTGAAAGACTATAATGCCTTGCTTCCAACCTATAGTATAGGTGATTGTGTTGTAGAGTATCAGGGATTG CCTCCAAACCAGACGTCTGACAAGTGGATACCTCTCCAAGGAGTAACAAGGGGAGAGATCCACGTTCGGATAACTAGGAAAGTTCCAGAACTACAAACAA GAAGCAGTTTGGAGGCTGATGCATCTTTAACCAAATCACACCAAATTTCTAACCAGATGAAACAATCGATGATCAAGTTGCAGTCTTTGATTGAGGATGG CAACCTGGATGGTCTCTCGACAGCCTTGAGCGAGATGCAAAGCCTAGAGGACATACAAGAAGAGTACACGGTACAGCTCGAGACTGAGCAAATGCTTCTT CTTAACAAGATAAAGCAGCTTGGTCAGGAAATTATGAGCTCATCATCTTCCTTGAGCACAAGATCTTCTGGATTTTGA
AA sequence Show only first row Show all	>Potri.015G046700.1 pacid=42776658 polypeptide=Potri.015G046700.1.p locus=Potri.015G046700 ID=Potri.015G046700.1.v4.1 annot-version=v4.1 MGRRKGRAGFKVKELLEFFNHLLEEKPSIAFLIPLLLVCWGIEKWVFSFSNWVPLVVAIWATFQYCSHQQRLLVEDLNKKWKRVVLNTSPITPLEHCEWM NKLLMEIWTSYMNPKLATRFSSIVEKRLKQRRSKLIEKIELQEFSLGSCPPYLGPHGTCWSTSGDQRIMNLGFDWDTSDMSILLLAKLAKPLMGTARIVI NSLHIKGELLLMPVLDGRAVLYSFVSTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKVLTDTLVKTMVEPHRRCYCLPAVDLRKKAVGGIVYVSVISAR KLSRSNLRGSPPRREQSHSLNGSLVEHFDDEDLRTFVEVELGQLTRRTEVRLGSSPRWDSTFNMVLHEDTGTLRLHLYNCPPNSVKYDYLASCEIKMKYA ADDSTAFWAIGPDSGVIAKHAEFCGNEVEMVVPFEGVTSGELTVKLVVKEWQFSDGSLSLNKFNVSSLKSMYGSSNLLSRTGRKINVAIMEGKDLISKER SGKCDPYVKLQYGKVLQKTRTAHNSNPFWNQKFEFDEIVDDGCLKIKCYSEEIFGDENIGSARVNLEGLLEGSIRDIWVPLERVNSGELRLQIEAVRVND SEGSRGSVSGSFNGWIELILVEAKDLIAADLRGTSDPYVRVQYGSLKKRTKVMYKTLNPQWNQTLEFPDDGSPLELHVKDYNALLPTYSIGDCVVEYQGL PPNQTSDKWIPLQGVTRGEIHVRITRKVPELQTRSSLEADASLTKSHQISNQMKQSMIKLQSLIEDGNLDGLSTALSEMQSLEDIQEEYTVQLETEQMLL LNKIKQLGQEIMSSSSSLSTRSSGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.015G046700 [exp]	0	1
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Potri.013G160500 [exp]	1.00	0.8597	STA1.2
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G299000 [exp]	1.41	0.8425
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.002G003700 [exp]	7.21	0.7828
AT1G08730		PCR43, ATXIC, X...	MYOSIN XI C, Myosin family pro...		Potri.002G041800 [exp]	9.48	0.8096
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	10.81	0.8326
AT5G07900			Mitochondrial transcription te...		Potri.001G034600 [exp]	16.52	0.7987
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	19.28	0.8251
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	21.07	0.8212
AT3G54440			glycoside hydrolase family 2 p...		Potri.003G196500 [exp]	24.00	0.7761
AT1G19485			Transducin/WD40 repeat-like su...		Potri.008G200900 [exp]	25.09	0.7799

Compare expression of checked genes

Potri.015G046700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.