Plant FIBer expression Database

Potri.015G046900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73850 417 / 1e-138 Protein of unknown function (DUF1666) (.1)
AT3G20260 176 / 4e-49 Protein of unknown function (DUF1666) (.1)
AT1G69610 117 / 2e-27 Protein of unknown function (DUF1666) (.1)
AT5G39785 104 / 3e-23 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
AT3G01175 54 / 3e-07 Protein of unknown function (DUF1666) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G056400
[exp]
820 / 0 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1)
Potri.008G004400
[exp]
186 / 2e-52 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1)
Potri.004G126800
[exp]
129 / 3e-31 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
Potri.017G082300
[exp]
128 / 8e-31 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
Potri.017G084200
[exp]
94 / 4e-20 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038936
[exp]
500 / 2e-172 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1)
Lus10027226
[exp]
490 / 2e-167 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1)
Lus10034809
[exp]
165 / 7e-45 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1)
Lus10033354
[exp]
155 / 9e-42 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1)
Lus10036751
[exp]
115 / 1e-26 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
Lus10037176
[exp]
114 / 2e-26 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
Lus10015368
[exp]
108 / 2e-24 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
Lus10007264
[exp]
84 / 1e-16 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07891 DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence
>Potri.015G046900.3 pacid=42775498 polypeptide=Potri.015G046900.3.p locus=Potri.015G046900 ID=Potri.015G046900.3.v4.1 annot-version=v4.1
ATGACATGTTCAAGAGAAGCTCTTGCTAGGTTGTTCCACAATGTCTCAAGCTCCTCCTTCCTTCTCCTTCTCTTCCTCTACTTCTCCTCCACTTTGCTCC
TTAAGCTCATCAACTTCATTGGCAGCTATCCTATAATCCAAAGAAACCAAAATGTATATGAATTTAATTTCTCTGATGAAGAGGAGGAGGAAGAAAATGA
AACGTATAGCTACTATGCTCAGTCTATGGAAAAAGATAACCTTGTGGCCGACATAATCCATGGCTGTGAATATGAATCAGTAATTCAGGTTATGCCTAAC
AACAGCACTCATACAAATCATAATCATGTTGAAGATTTCGTAAGCACACCGGAGGCCGTTCTTGAAGAGCAAGATGATAGTTTTGCTAGTGATGAAATGC
TTTCTGTCCTTGCCTCAGCAGGTTCAGAATCAGAACATGGTGACGCAGATATGGTTGAAGAAGAGATGCAAACAAGTGATGCTGATTCGGTTCATGATTC
TGTCCCAAATCAACAGGGCCCCACAGCTCCGATCACCAAAGACCTACACAAAAGTGATTTCATGGACGGTGACGAAAACAGTGGCGAAGACTGCACTAAT
CAAGAAATTGAAAATAAGAAGCTGAAGGATACAAATTTATCTGTTGATGAAAAGTTCCTGATTTATGCGCCAAACCGATTGGAACTGGGGAAACTTCAAG
TTCAAGAAAAGGATGAGGAAGAAATATTTGGTGACTCGTGCACAGTAGGCTCAACTTCTAAGAGCTCCTCTGAATGGAGGAGCTTAATCAAGGACTCAGG
AACCGAAGATCCATTTTCTTCTTCGTCGCGAAGAAGTTGCCCCAGGTGGGAATCCTACACAGTGTTCCAAAAATATGATGAGGAGATGATGTACCTAGAC
AGAATTAGTGCTCAAAAGCTTCATGAAACAGAGTCTCTAAAGTCCATCCATGTGAATCCAAGATCAATTTCAGATAGGATTGTTCACAAGTTTTCTACCA
TAAACAAGAAGCCTTCCGACAACTGCCAGAACCCGTATCATGAATTGGAAGGTGCCTATGTAGCTCAAATTTGCTTAACATGGGAAGCACTTAATTGGAA
CTACAAGAACTTTGGACTAAAAAGAGCTTCGCAGTGCGACTTTGATCCTGGTTGTCCAGCACATATTGCACAAAAGTTTCAGCAATTCCAAGTCCTTTTG
CAGAGATATGTCGAAAATGAGCCTTATGAGCAAGGCAGGAGACCTGAGGTTTATGCCAGAATGAGGCTTTTAGCACCAAAGTTACTCCTGGTGCCAGAAT
ATCGAGATTCTGAAGATGATCAGAAAGGTGATGCTAAATTTGGCTCAAGAATTTCGTCGGCTGCATTTCTAATGATAATGGAAGACGGAATCCGAACATT
CATGGATTTTCTCGAGGATGATAAGGAGAAAACCTGCCAGATTCTGAAGGCATTCTTTAGGCGAAATCGAAGGGGTTCAGTAGATCCTGTTCTTCTCCAA
TTAATGAAGAAAGTTAATAAAAAAAAAAAGATGAAGCTTAAAGATCTTCGCCGAGCTCGCACTTGCATAAGGAAAAGAAAATTAACGGTGGAGGAAGAGA
TGGAGTTCTTGATGGGACTAATAGACTTAAAACTTGTCTCTAGAGTATTGAGAATGGCTGACATGAGTGAAGAAAAATTGCATTGGTGTGAAGAAAAAAT
GAGCAAAGTGAGAGTATTGGATGGGAAACTTCAAAGAGATTCCTCACCACTTTTTTTCCCCGCACATTGA
AA sequence
>Potri.015G046900.3 pacid=42775498 polypeptide=Potri.015G046900.3.p locus=Potri.015G046900 ID=Potri.015G046900.3.v4.1 annot-version=v4.1
MTCSREALARLFHNVSSSSFLLLLFLYFSSTLLLKLINFIGSYPIIQRNQNVYEFNFSDEEEEEENETYSYYAQSMEKDNLVADIIHGCEYESVIQVMPN
NSTHTNHNHVEDFVSTPEAVLEEQDDSFASDEMLSVLASAGSESEHGDADMVEEEMQTSDADSVHDSVPNQQGPTAPITKDLHKSDFMDGDENSGEDCTN
QEIENKKLKDTNLSVDEKFLIYAPNRLELGKLQVQEKDEEEIFGDSCTVGSTSKSSSEWRSLIKDSGTEDPFSSSSRRSCPRWESYTVFQKYDEEMMYLD
RISAQKLHETESLKSIHVNPRSISDRIVHKFSTINKKPSDNCQNPYHELEGAYVAQICLTWEALNWNYKNFGLKRASQCDFDPGCPAHIAQKFQQFQVLL
QRYVENEPYEQGRRPEVYARMRLLAPKLLLVPEYRDSEDDQKGDAKFGSRISSAAFLMIMEDGIRTFMDFLEDDKEKTCQILKAFFRRNRRGSVDPVLLQ
LMKKVNKKKKMKLKDLRRARTCIRKRKLTVEEEMEFLMGLIDLKLVSRVLRMADMSEEKLHWCEEKMSKVRVLDGKLQRDSSPLFFPAH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73850 Protein of unknown function (D... Potri.015G046900
[exp]
0 1
AT4G37060 AtPLAIVB, PLP5,... phospholipase A IVB, PATATIN-l... Potri.019G014401
[exp]
3.16 0.9869
AT1G52820 2-oxoglutarate (2OG) and Fe(II... Potri.006G248000
[exp]
9.59 0.9797
AT3G16660 Pollen Ole e 1 allergen and ex... Potri.010G012400
[exp]
11.66 0.9772
AT5G45530 Protein of unknown function (D... Potri.010G154866
[exp]
13.26 0.9708
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.010G050701
[exp]
13.41 0.9749
AT5G46880 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeob... Potri.001G137800
[exp]
14.49 0.9779
Potri.002G227701
[exp]
16.91 0.9751
AT5G18080 SAUR24 small auxin up RNA 24, SAUR-li... Potri.009G127600
[exp]
18.49 0.9723
AT1G78850 D-mannose binding lectin prote... Potri.011G110000
[exp]
18.89 0.9708
AT5G65140 TPPJ trehalose-6-phosphate phosphat... Potri.007G090900
[exp]
19.74 0.9555

Potri.015G046900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.