Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68490 116 / 3e-33 unknown protein AT5G16110 106 / 1e-28 unknown protein AT3G02555 100 / 8e-27 unknown protein AT1G13390 77 / 7e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056500 [exp] 201 / 1e-66 AT1G68490 119 / 2e-34 unknown protein Potri.017G114700 [exp] 160 / 2e-50 AT5G16110 139 / 4e-41 unknown protein Potri.004G099800 [exp] 147 / 2e-45 AT5G16110 135 / 7e-40 unknown protein Potri.010G124400 [exp] 134 / 3e-40 AT1G68490 151 / 7e-47 unknown protein Potri.008G121000 [exp] 125 / 1e-36 AT1G68490 150 / 3e-46 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028474 [exp] 137 / 3e-41 AT5G16110 160 / 8e-50 unknown protein Lus10009170 [exp] 132 / 2e-39 AT5G16110 160 / 7e-50 unknown protein Lus10033560 [exp] 119 / 2e-34 AT5G16110 136 / 3e-40 unknown protein Lus10017599 [exp] 118 / 4e-34 AT5G16110 137 / 8e-41 unknown protein Lus10034327 [exp] 100 / 5e-27 AT1G68490 149 / 1e-46 unknown protein Lus10041444 [exp] 98 / 9e-26 AT1G68490 180 / 5e-58 unknown protein Lus10027224 [exp] 87 / 3e-22 AT3G02555 84 / 2e-20 unknown protein Lus10038934 [exp] 68 / 7e-15 AT1G68490 71 / 4e-16 unknown protein Lus10027557 [exp] 49 / 2e-08 AT1G68490 64 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G047100.1 pacid=42776305 polypeptide=Potri.015G047100.1.p locus=Potri.015G047100 ID=Potri.015G047100.1.v4.1 annot-version=v4.1 ATGAATTATTATGGATATGAGCAAAAGAGCGCCATGATAGGAGGTTGTGAGGAAAGGGAGAGGATGATGGTGGTGGTGGAGTCTGTGGTTTGTCCGAAGC CAAGGAGATTGGGACTTTTAAATCCTCCTCTTAATGAACAAATCAGACCTCTAAGATTGCCTGTCAATCACCATGCGGAGATGGCAGATTCGAAAGCCGG GGCAGAGCTGCTAGACATAATTCTTACTAAGGGAGGTTATGGTGGGGACAAACCCGGTTTCCAGGTGGCATCATCACCACCATTTTACTGTGGATCACCA CCATGTAGGGTATCAAATCCTGTAATCCAAGATGCTCGATTTGGTAATGAAAAAATAACCCCATTATCTCCTGCGCCACCATCCCCACCACCATCCTCAT CATCTGCACGTAAAGGAGGAGGTTGTGTCCGAATGAAGTTTGGGCACACGCCAGCTGCAGTAAGGATTGAAGGGTTTGATTGTCTCCGCAGAGATGGGCG AAACTGTAGCATCTCCGCTGTGGCATGA
AA sequence Show only first row Show all	>Potri.015G047100.1 pacid=42776305 polypeptide=Potri.015G047100.1.p locus=Potri.015G047100 ID=Potri.015G047100.1.v4.1 annot-version=v4.1 MNYYGYEQKSAMIGGCEERERMMVVVESVVCPKPRRLGLLNPPLNEQIRPLRLPVNHHAEMADSKAGAELLDIILTKGGYGGDKPGFQVASSPPFYCGSP PCRVSNPVIQDARFGNEKITPLSPAPPSPPPSSSSARKGGGCVRMKFGHTPAAVRIEGFDCLRRDGRNCSISAVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68490			unknown protein		Potri.015G047100 [exp]	0	1
AT1G68490			unknown protein		Potri.012G056500 [exp]	1.00	0.8180
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.004G145500 [exp]	1.41	0.8100	OST1.2
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.004G059000 [exp]	3.46	0.7539	GSK1.2
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.006G110200 [exp]	4.58	0.7848
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.015G118300 [exp]	8.06	0.7478
AT3G07030			Alba DNA/RNA-binding protein (...		Potri.002G240601 [exp]	8.12	0.7124
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.016G017500 [exp]	8.48	0.7230
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Potri.019G013100 [exp]	9.16	0.7120	Pt-GIF1.1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.011G068600 [exp]	9.48	0.7172	GSK1.1
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	10.24	0.7409	RHC1.2

Compare expression of checked genes

Potri.015G047100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.