Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63640 906 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 773 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 694 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 657 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 501 / 1e-159 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 479 / 9e-153 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 472 / 5e-150 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 430 / 7e-134 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 392 / 1e-120 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G72250 310 / 2e-88 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056700 [exp] 1617 / 0 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G104000 [exp] 952 / 0 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 932 / 0 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G467600 [exp] 525 / 2e-168 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 521 / 5e-167 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.005G021100 [exp] 509 / 2e-163 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 497 / 8e-159 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.002G201000 [exp] 484 / 2e-154 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 481 / 5e-153 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032264 [exp] 806 / 0 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 803 / 0 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 769 / 0 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032897 [exp] 521 / 9e-167 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10029865 [exp] 489 / 6e-156 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 469 / 8e-150 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 466 / 7e-148 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10001306 [exp] 459 / 3e-144 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10018049 [exp] 434 / 4e-135 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 424 / 8e-132 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.015G047400.3 pacid=42775517 polypeptide=Potri.015G047400.3.p locus=Potri.015G047400 ID=Potri.015G047400.3.v4.1 annot-version=v4.1 ATGAATTCAGCTTCGGATCACCCCATGGTACAAAATGGGAGAGCCAATAGCTCAAAGGTATCTGTCAGTTCGGGTGTTTTTGAACCAACTGTAATTCGTA ACAATGACATTGAAGCCAATAAGCGAGCCGTATTGGTGGAGTGGATGAATAGCATTGTTCCTAGTCTAAATTTGCCAGTAAAAGCTTCATCCGAGGAGTT GAGAGCCTGCTTGATCGATGGCACTGTTCTACTACAGCTTTTAAATAAGCTTAGACCTGGTTATGCATACAAGGCTGGTAGTTCTAGCTCTGAAAATGTT AAGAAGTTTCAGGCAAGTATGGATGAATTGGGGATTCTCAAGTTCGAACCGTCGGACCTGGAGAAGGGATCTATGAAGAACGTTATGGATTGCCTTTCAA CACTTCGAGCACAATTCGCATATATGGGAGTTGTTTCTCCCACTGGTGGGATTAAATATGGCAGCCCTCGTGGGGATGCATCTTCCAATGGCCTTTCTTC TTCAACATTTGGGGAAGAAAAGCGAAAGTTTTCTCCAGAGTCAAAAATTCAACAAGCCTTGCGTAGTCCTGTTATGACAGAGCCATCAGCTGCATCCATG CCCCATGTTGTACATAAGTTCCATGAGATGTTTCAACTGAAACAAGGCTGCTATTCAGATCTTTCTGCTGCAAAAATCTCTGAAATGATGAAATCAAATA GTTTGGATAATGCACCAACTCAGTCACTTTTGAGTGTTGTGAATGGAATATTGGATGAGAGCATTGAAAGAAAGAGTGACGAGATACCACATCGTGTGGC TTGTCTGTTGAGAAAGGTTGTACAAGAGATTGAACGCCGTATTTCAACTCAAGCAGAACACTTAAGAACACAAAATAATCTATTTAAGGTTCGTGAGGAG AAGTACCAGTCAAGAATCAGAGTACTTGAAGCCCTGGCTTCTGGGACTGGTGAAGAGAGGGGGGTTGTCATGGACCAGCTTCAACAAATTAAGATTGAGA AGTCCAAAATGGAAGAAGAGAAGAAAATTGGAGTGGACCATGTTGCTAAGTTGACCAAAGAGCAGGAGCAAAGAGATCTTGAACTTTCAGCCTTGAAACA AGAATTAGAATTAGTGAAACAGACACATGAACTACATCGCTTGCAAATGGAAACAGAAGCTAAGGCTGCTAAAGGTGGCCTTGAGGGGAGATTAAAAGAG CTTGAAATCCACTTGGAAGATTCGAGGAACCAAGTGAGAGTGCTTGAGGCATATTCTCAGTCAAAATCTAAGATGTTCAACAAGAAAGAACACATCTTTA AGAGCTTTGTTGAGCTTCAATTTGGTGCACTGAAGGAACTGAGGTTGTCCTCTAAGTCCATCAAGCATGAAATTTTAGAAGTACAACAAAGCTACTTGGA GGAATTCAATGGCCTAGGAGTAAAGTTAAAAGCATTAATTGATGCAACTGGGGATTATCATATAGTCCTTGCTGAAAATAGGAGGATGTTTAATGAGCTT CAGGAACTAAAAGGAAACATCAGAGTTTATTGCCGGATAAGGCCATTTCTTCCTGGGCATGGTGAAAAACATACAACGGTAGAATATATAGGTGAACACG GAGAGTTAGCAGTTGTGAATCCCTCCAAACAAGGGAAAGATAGACGCCGCAATTTTAAGTTCAATAAGGTCTTCGGTCCAGATTCTACTCAAGCTGAGGT ATATTCAGACACTCAACCGTTGATACGTTCTGTCCTGGATGGATACAGCGTATGTATATTTGCTTATGGACAAACTGGTTCGGGAAAAACTTACACAATG ACAGGTCCTAATGGAGCATCTGAAGAGGATTGGGGGGTTAATTATCGGGCTCTAAATGACCTATTCAGTATTTCTCAGAATAGAAGAGACTCCCTGATAT ATGAGATTCAGGTTCAGATGGTTGAAATATATAACGAACAAGTGCGTGATTTACTATTGAGTGATGGTTCTCAGAAAAAACTCGGGATTATTTCTACTGT CCAACCCAATGGTTTGGCTGTACCAGATGCTAGCATGCATCCTGTTACATCAACTTCAGACGTGTTAGAATTAATAGATGTTGGACTAAAAAACAGAGCT GTTGGAGCCACTGCCATGAATGAAAGAAGTAGCCGCTCTCATAGTGTTGTCAGTATCCATGTTCGTGGAAAGGATTTGCATTCTGGTGCTGCTTTACATG GTAATCTTCATTTAGTGGATCTAGCAGGGAGCGAAAGGGTAGATCGCTCTGAGGCAACTGGAGACAGACTTAGGGAAGCACAACATATAAACAAATCGTT ATCTGCCCTCGGGGATGTCATTTTCGCTCTTGCACAAAAGAATTCTCATGTACCATATAGAAACAGCAAGCTCACTCAACTACTTCAAAGCTCTTTAGGA GGTCAAGCAAAGACGCTTATGTTTGTACAGCTCAATCCTGATGTTAGTTCATATTCTGAAACTATAAGCACTCTGAAGTTTGCAGAGAGGGTCTCTGGAG TTGAGCTAGGTGCAGCTCGAAGCAGCAAAGAGGGCAGAGATGTTAGGGAATTAATGGGCCAGGTGGCATCTCTCAAAGACACAATTGCAAAAAAAGATGA TGAGATTGAGCAGTTGCAATTAATAAAAGATCATAAAAACGAGTATCCTGGTTCAGCGAGGTATGGTGATTCTTCTGCAAGCTATGATTCTTCAGGTGTT ATTCCTCATAGAACCCGAAAACCATCAGACAGGAGAAGTGTAGGAAGTGAGACTGCTTCTTATCAGGAAAGCATTTCAGAGTGCAGTGACAAGCATTCTG AAGCTGGTTCCCAGCAATCAAAACTTTCTGATGGGGACACAGGTCATGATATGTCATTTGCAGATGCTGAGATATTAAGATTTGAAGATGGAGACCATGA GGATAGATTAAGTGACATTTCTGAGAGTGTTCTTTCAGTGGGAACAGAACCTGATGACACAACAGATCAAGGCACAAAACTATCACAGACATTGCGGAAG AGTAAAGTGGCATCTACGATTCGACTCCTACAAAACCAAACGCAAAACGCATCAAAGACAGTGACTGTGTCAAGGGACAGCCCAAAAGGGTCCGCAAGTA TTAAGAAAACTGTCAATTCCAACCTAGTCAAGCCTTCAAAGCGGTGGCAGTAA
AA sequence Show only first row Show all	>Potri.015G047400.3 pacid=42775517 polypeptide=Potri.015G047400.3.p locus=Potri.015G047400 ID=Potri.015G047400.3.v4.1 annot-version=v4.1 MNSASDHPMVQNGRANSSKVSVSSGVFEPTVIRNNDIEANKRAVLVEWMNSIVPSLNLPVKASSEELRACLIDGTVLLQLLNKLRPGYAYKAGSSSSENV KKFQASMDELGILKFEPSDLEKGSMKNVMDCLSTLRAQFAYMGVVSPTGGIKYGSPRGDASSNGLSSSTFGEEKRKFSPESKIQQALRSPVMTEPSAASM PHVVHKFHEMFQLKQGCYSDLSAAKISEMMKSNSLDNAPTQSLLSVVNGILDESIERKSDEIPHRVACLLRKVVQEIERRISTQAEHLRTQNNLFKVREE KYQSRIRVLEALASGTGEERGVVMDQLQQIKIEKSKMEEEKKIGVDHVAKLTKEQEQRDLELSALKQELELVKQTHELHRLQMETEAKAAKGGLEGRLKE LEIHLEDSRNQVRVLEAYSQSKSKMFNKKEHIFKSFVELQFGALKELRLSSKSIKHEILEVQQSYLEEFNGLGVKLKALIDATGDYHIVLAENRRMFNEL QELKGNIRVYCRIRPFLPGHGEKHTTVEYIGEHGELAVVNPSKQGKDRRRNFKFNKVFGPDSTQAEVYSDTQPLIRSVLDGYSVCIFAYGQTGSGKTYTM TGPNGASEEDWGVNYRALNDLFSISQNRRDSLIYEIQVQMVEIYNEQVRDLLLSDGSQKKLGIISTVQPNGLAVPDASMHPVTSTSDVLELIDVGLKNRA VGATAMNERSSRSHSVVSIHVRGKDLHSGAALHGNLHLVDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAQKNSHVPYRNSKLTQLLQSSLG GQAKTLMFVQLNPDVSSYSETISTLKFAERVSGVELGAARSSKEGRDVRELMGQVASLKDTIAKKDDEIEQLQLIKDHKNEYPGSARYGDSSASYDSSGV IPHRTRKPSDRRSVGSETASYQESISECSDKHSEAGSQQSKLSDGDTGHDMSFADAEILRFEDGDHEDRLSDISESVLSVGTEPDDTTDQGTKLSQTLRK SKVASTIRLLQNQTQNASKTVTVSRDSPKGSASIKKTVNSNLVKPSKRWQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63640			P-loop nucleoside triphosphate...		Potri.015G047400 [exp]	0	1
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004100 [exp]	12.00	0.9022
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Potri.011G151800 [exp]	20.34	0.9007
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117000 [exp]	24.57	0.9004
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Potri.003G129100 [exp]	31.08	0.8984	Pt-CYP86.7
AT5G18060			SAUR-like auxin-responsive pro...		Potri.009G126300 [exp]	31.84	0.8996
					Potri.011G006500 [exp]	33.22	0.8983
AT1G34640			peptidases (.1)		Potri.002G096700 [exp]	36.98	0.8979
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138350 [exp]	40.62	0.8971
AT4G24350			Phosphorylase superfamily prot...		Potri.013G080300 [exp]	42.28	0.8970
AT5G54010			UDP-Glycosyltransferase superf...		Potri.006G179700 [exp]	44.45	0.8970

Compare expression of checked genes

Potri.015G047400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.