Plant FIBer expression Database

Potri.015G047500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73990 848 / 0 SPPA1, SPPA signal peptide peptidase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021721
[exp]
821 / 0 AT1G73990 871 / 0.0 signal peptide peptidase (.1)
Lus10007970
[exp]
821 / 0 AT1G73990 821 / 0.0 signal peptide peptidase (.1)
Lus10034647
[exp]
813 / 0 AT1G73990 868 / 0.0 signal peptide peptidase (.1)
Lus10013332
[exp]
542 / 0 AT1G73990 626 / 0.0 signal peptide peptidase (.1)
Lus10013334
[exp]
541 / 0 AT1G73990 615 / 0.0 signal peptide peptidase (.1)
Lus10013333
[exp]
531 / 0 AT1G73990 612 / 0.0 signal peptide peptidase (.1)
Lus10013336
[exp]
176 / 2e-48 AT1G73990 231 / 2e-69 signal peptide peptidase (.1)
Lus10013335
[exp]
163 / 2e-46 AT1G73990 174 / 7e-51 signal peptide peptidase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0127 ClpP_crotonase PF01343 Peptidase_S49 Peptidase family S49
Representative CDS sequence
>Potri.015G047500.1 pacid=42775943 polypeptide=Potri.015G047500.1.p locus=Potri.015G047500 ID=Potri.015G047500.1.v4.1 annot-version=v4.1
ATGTCAAAATTACTACTACTACTCCACTCTTCTCCTCCTCTTCCTCCTCCTCCTTTTCACTTCACTACAGCTCCAATCCTCCACCACCGTGCCACCACAC
TCCTCCGCGCTTCAATTCTCTCCAAAAAACCTCCTAATCTCTCCTCCTCTCTCGCTCTCTACCGAAAAGCCACTCTATCCTCCTCTTTCCTCTCCCCTTC
CTCTTCATTTCGCTGCAGAACCTTCTCTGTCCGCGCTTTTGATTCTGATGATTCCAAAACCGAACAAGAAGAAGAGAAGAAGGAATCTTTTCATGTTAAG
AAAAGCGATGAGGATTATCCAAGTGGAGAGTTCGATTTCCAGGAGATTGGAGCTTGGAATCGTTTTCTTGTTAAGCTTAAAATGCTTATTGCTTTCCCTT
GGGAACGCGTTCGCAAAGGAAGCGTTTTGACAATGAAATTACGGGGCCAGATATCTGATCAGCTAAAGAGCCGTTTCTCTTCAGGATTGTCATTGCCTCA
AATTTGTGAGAATTTTATAAAAGCAGCTTATGATCCTCGGATTTCGGGTATTTATCTTCATATAGATGGGTTGAATTGTGGGTGGGCTAAAGTTGAGGAA
CTCCGAAGACACATTTTCAATTTCAAGAAATCAGGGAAATTCGTTGTTGCCTACCTCCCTGCTTGTAGGGAGAAAGAGTATTATCTTGCCTCTGCCTGTG
ACGACCTTTATCTCCCACCCACTGCTTATTTTTCTTTTTATGGTTTCACTGTTCAAGCAGCTTTTCTTGCAGGTGTTTTTGAGAACGTAGGAATTCAACC
AGATGTACAACGGATTGGTAAATATAAAAGTGCCGGGGATCAACTTACTCGAAAAAGTATGTCTAAAGAAAATTGTGAGATGCTGACTGCAATTCTTGAT
AACATCTATGGGAATTGGCTGGATAAAGTTTCTTCGACAAAAGGAAAGAAAATAGAAGACATGAAGAACTTCATTAATGAAGGTGTCTATAAGGTAGAAA
GGCTGAAAGAAGAGGGCTTGATAACAAACATGCACTATGATGACGAGGTTATCTCAATGTTGAAAGAGAAAGTTGGAGTGCAAAAGGATAAAGTTCTTCC
TATGGTTGATTACAGCAAATACTCGCGGGTTAGGAACTGGACTCTTGGTTTAACAGGAGGCAGAGACCTAATAGCCATTATCAGAGCCTCTGGGAGCATC
AGTCGTGTGAAGAGTCCATTAAGCTTATCTGGTTCTGGTATCATCGGGGAACAGCTCATTGAGAAGATTCGTCAGGCAAGAGAGTCGAAAAAATATAAAG
CTGCTATCATCCGAATTGACAGCCCTGGAGGTGATGCCCTCGCATCTGATTTAATGTGGAGGGAAATCAGACTTCTGGCTGAATCAAAACCTGTGATTGC
ATCAATGTCTGATGTAGCAGCAAGTGGAGGATATTATATGGCAATGGCCGCAGATACCATTGTTGCAGAAAATTTGACCTTAACTGGGTCAATTGGAGTT
GTTACAGGGAAGTTTAGTCTCGGTAAACTGTATGAGAAAATTGGCTTCAACAAGGAGATCATATCAAGGGGTAAATATGCTGAGCTCCTTGCAGCAGATC
AGCGACCTTTAAGACCAGATGAAGCAGAACTTTTTGCCAAGTCTGCTCAGAATGCTTATGAGCAATTTCGAGATAAGGCAGCATTTTCAAGATCAATGCC
AGTGGATAAGATGGAAGAGGTTGCACAAGGCAGAGTCTGGACAGGTCAAGATGCAGCTTCGCGAGGTTTAGTGGATGCAATTGGTGGGTTTTCTCGTGCA
GTTGCTATAGCAAAACAGAAGGCTAATATACCCCAGGACAGACAGGTAATGCTGGTTGAACTATCAAGACCATCTCCTACGCTACCAGAGATCCTAAGTG
GCATAGGAAGTTCGGTGGTTGGTGCAGAAAGAACCTTAAAAGAATTGCTACAAGACTTGGCATTTTCCAATGGAGTTCAAGCCCGGATGGATGGTATTCT
ATTCCAGGGACTGGAGGAGGCTTCTTATGACAATCCCATCTTAACTTTGATAAAAGATTACCTTGGTTCTCTCTGA
AA sequence
>Potri.015G047500.1 pacid=42775943 polypeptide=Potri.015G047500.1.p locus=Potri.015G047500 ID=Potri.015G047500.1.v4.1 annot-version=v4.1
MSKLLLLLHSSPPLPPPPFHFTTAPILHHRATTLLRASILSKKPPNLSSSLALYRKATLSSSFLSPSSSFRCRTFSVRAFDSDDSKTEQEEEKKESFHVK
KSDEDYPSGEFDFQEIGAWNRFLVKLKMLIAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYDPRISGIYLHIDGLNCGWAKVEE
LRRHIFNFKKSGKFVVAYLPACREKEYYLASACDDLYLPPTAYFSFYGFTVQAAFLAGVFENVGIQPDVQRIGKYKSAGDQLTRKSMSKENCEMLTAILD
NIYGNWLDKVSSTKGKKIEDMKNFINEGVYKVERLKEEGLITNMHYDDEVISMLKEKVGVQKDKVLPMVDYSKYSRVRNWTLGLTGGRDLIAIIRASGSI
SRVKSPLSLSGSGIIGEQLIEKIRQARESKKYKAAIIRIDSPGGDALASDLMWREIRLLAESKPVIASMSDVAASGGYYMAMAADTIVAENLTLTGSIGV
VTGKFSLGKLYEKIGFNKEIISRGKYAELLAADQRPLRPDEAELFAKSAQNAYEQFRDKAAFSRSMPVDKMEEVAQGRVWTGQDAASRGLVDAIGGFSRA
VAIAKQKANIPQDRQVMLVELSRPSPTLPEILSGIGSSVVGAERTLKELLQDLAFSNGVQARMDGILFQGLEEASYDNPILTLIKDYLGSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73990 SPPA1, SPPA signal peptide peptidase (.1) Potri.015G047500
[exp]
0 1
AT3G27925 DEGP, DegP1, DE... DegP protease 1 (.1) Potri.001G348800
[exp]
1.73 0.9688
AT2G30950 FTSH2, VAR2 VARIEGATED 2, FtsH extracellul... Potri.014G139500
[exp]
3.74 0.9566 Pt-VAR2.3
AT4G13250 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-... Potri.018G081200
[exp]
4.24 0.9548
AT3G06510 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glyco... Potri.010G149500
[exp]
5.09 0.9403 Pt-SFR2.2
AT3G19900 unknown protein Potri.010G169700
[exp]
6.70 0.9504
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Potri.009G043800
[exp]
8.48 0.9488
AT5G50920 CLPC1, CLPC, AT... HEAT SHOCK PROTEIN 93-V, DE-RE... Potri.015G105100
[exp]
8.71 0.9533 Pt-CLPC.2
AT1G54570 Esterase/lipase/thioesterase f... Potri.013G033300
[exp]
9.53 0.9471
AT1G54570 Esterase/lipase/thioesterase f... Potri.013G033600
[exp]
10.00 0.9442
AT5G52450 MATE efflux family protein (.1... Potri.012G051900
[exp]
13.74 0.9296

Potri.015G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.