Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18485 1077 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 582 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 545 / 2e-177 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 535 / 4e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 531 / 2e-174 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 532 / 3e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G11290 519 / 1e-170 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 518 / 8e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 502 / 8e-166 MEF22 mitochondrial editing factor 22 (.1) AT5G16860 504 / 1e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075800 [exp] 600 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 594 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 592 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 577 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 571 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 532 / 1e-174 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 521 / 3e-171 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 518 / 4e-170 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 515 / 2e-168 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014707 [exp] 624 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 603 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 598 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 569 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 563 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 556 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 552 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 548 / 3e-180 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 518 / 2e-170 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 507 / 7e-166 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.015G047600.1 pacid=42775961 polypeptide=Potri.015G047600.1.p locus=Potri.015G047600 ID=Potri.015G047600.1.v4.1 annot-version=v4.1 ATGAATTGGTTGCAACAACTCACTAATACAATTATAATAGCACCGTCACTGCCATCCCGCAACCACCACCACCACCACCACCACCACCAGCAGCAGCAGT CTTCCTTGTACAGAACCAACCTTAAACCACACAAAAGCTTTAACTCCCTCTACCCAAAATCATCTCTTTCTCTCTCTAACCAAACCGACTCTCTACCTGA TCAAACCAACCGCCCCTCATTTCTCCAAGAAATAGCCGCTCTCTGTGAAACTGATAACCTCACTACAGCTTTAACTCTTATTCAATCACACTCTCAAAAT GCTGCTTTTATTTCATTACAAGCAAAAGAAGCAATTGGTTTATTGCTTCAAGCATGTGGCAACCAAAAAGATATCGAGACTGGTAGACGACTACACAAGT TTGTCTCAGACTCGACCCATTATAGAAATGATTATGTTCTCAATACCCGTCTTATTAAGATGTATGCAATGTGTGGGTATCCTTTGGATTCTCGTTTTGT GTTTGATAATATGGAGACTAAGAATTTGATTCAGTGGAATGCACTTGTTAGTGGATACACAAGGAATGGACTTTATGGCGATGTAGTTAAAGTGTTTATG GATTTGGTTTCTGATACAGATTTTCAGCCTGATAATTTTACTTTCCCTTCTGTGATCAAGGCTTGTGGTGGGATTTTGGATGTTAGGTTAGGAGAGGTTA TTCATGGGATGGTGATTAAGATGGGTTTGGTTTTGGATGTGTTTGTGGGCAATGCATTGGTGGGAATGTATGGGAAATGTGGGGCTGTGGATGAGGCGAT GAAAGTGTTTGATTTTATGCCCGAAACGAATTTGGTTTCGTGGAATTCCATGATTTGTGCATTTTCTGAAAATGGGTTTTCTAGAGATAGTTTTGATTTG CTGATGGAGATGTTAGGAGAGGAAGGGTTATTGCCTGATGTAGTGACGGTGGTGACTATATTACCTGTTTGCGCAGGAGAAGGAGAAGTTGATATAGGAA TGGGGATTCATGGATTGGCAGTGAAACTAGGTCTGAGCGAAGAGGTGATGGTGAACAATGCTATGGTATACATGTATTCAAAATGTGGGTACTTGAATGA AGCGCAAATGTCATTTGTGAAGAATAATAACAAAAATGTGGTTTCTTGGAACACCATGATCAGTGCTTTTTCTTTGGAAGGAGATGTCAATGAGGCATTT AATCTCTTGCAGGAAATGCAGATCCAAGGAGAGGAAATGAAAGCTAATGAGGTCACCATTTTGAATGTTTTGCCAGCTTGTCTGGACAAGTTGCAATTGA GGAGCTTGAAAGAACTTCATGGCTATTCATTTAGACATTGTTTTCAACATGTAGAATTGTCCAATGCTTTTATTTTAGCCTATGCTAAGTGTGGGGCACT GAATTCTGCTGAGAAAGTCTTTCATGGTATTGGGGATAAGACTGTGAGCTCTTGGAATGCACTTATTGGTGGTCATGCACAGAATGGTGATCCTAGAAAA GCTTTGCATTTGTTATTTCAGATGACATATTCTGGCCAACAACCTGATTGGTTTACCATTAGTAGCCTGCTGTTAGCTTGTGCCCATCTGAAATCCCTGC AATATGGTAAAGAGATTCACGGATATGTACTACGGAATGGACTAGAAACTGATTTTTTTGTTGGTACCTCACTTCTGTCCCACTACATTCACTGTGGGAA AGCATCTTCTGCTCGTGTATTGTTTGACAGGATGAAGGATAAAAATTTAGTATCTTGGAATGCAATGATTTCAGGTTACTCACAAAATGGACTACCATAT GAATCCCTGGCTCTATTTCGAAAATCACTTTCTGAGGGAATACAATCTCACGAGATTGCCATAGTGAGTGTGTTTGGGGCTTGTTCTCAACTGTCAGCTC TACGGCTGGGAAAAGAAGCTCATGGTTATGTATTAAAAGCCCTGCAAACAGAAGATGCTTTTGTAGGCTGTTCAATCATTGACATGTACGCAAAAAGTGG TTGTATAAAAGAATCTCGCAAGGTTTTTGATGGGTTGAAAGATAAAAACGTAGCATCATGGAATGCAATAATTGTGGCACATGGAATTCATGGACATGGA AAAGAAGCCATAGAACTGTACGAAAGAATGAAGAAAGTTGGCCAAATGCCTGATAGATTTACATATATTGGCATTTTGATGGCATGTGGTCATGCAGGGC TTGTTGAAGAGGGACTGAAATATTTCAAAGAGATGCAAAATTTCAATTTGATTGAACCAAAATTGGAGCATTATGCATGTCTTATTGACATGCTGGCCCG TGCTGGAAGATTGGATGATGCTCTAAGGCTTGTCAATGAGATGCCTGAGGAAGCAGACAATAGAATCTGGAGCTCGCTCCTCAGTTCCTGTAGAACTTTT GGTGCTCTGGAAATTGGAGAGAAAGTTGCCAAGAAGCTACTAGAATTAGAACCAGACAAAGCAGAGAACTACGTGTTACTTTCTAACTTGTATGCTGGAT TAGGGAAATGGGATGGTGTGCGAAGGGTGAGGCAAATGATGAAAGAGATTGGTCTTCAAAAGGATGCTGGCTGCAGTTGGATTGAGGTTGGAGGGAGAGT TTATAGCTTTGTTGTTGGTGACAGTTTGCAACCAAAATCAGCAGAGATCCGGGTGATATGGAGAAGATTGGAGGAAAGGATCAGTGAAATTGGATATAAG CCTAACACAAGTTCTGTGCTGCATGAAGTAGGTGAGGAGGAGAAGATTGACATATTGCGGGGGCATAGTGAAAAACTAGCAATTTCTTTTGGATTGTTAA AGACAACTAAAGGTACAACCCTGAGGATTTACAAGAATCTACGCATTTGTGCAGATTGTCATAATGCTGCGAAGTTAATATCGAAGGCAGTTGAAAGGGA GATAGTTGTGAGAGACAACAAGCGCTTTCATCATTTTAGAGATGGACTTTGTTCTTGTTGTGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.015G047600.1 pacid=42775961 polypeptide=Potri.015G047600.1.p locus=Potri.015G047600 ID=Potri.015G047600.1.v4.1 annot-version=v4.1 MNWLQQLTNTIIIAPSLPSRNHHHHHHHHQQQQSSLYRTNLKPHKSFNSLYPKSSLSLSNQTDSLPDQTNRPSFLQEIAALCETDNLTTALTLIQSHSQN AAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGYPLDSRFVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFM DLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDL LMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAF NLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRK ALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPY ESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHG KEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLSSCRTF GALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYK PNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.015G047600 [exp]	0	1
AT2G17140			Pentatricopeptide repeat (PPR)...		Potri.004G205600 [exp]	1.41	0.8322
AT4G14820			Pentatricopeptide repeat (PPR)...		Potri.010G086200 [exp]	7.74	0.7612
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082366 [exp]	10.09	0.7825
AT3G28720			unknown protein		Potri.017G078700 [exp]	12.00	0.7409
AT5G59500			protein C-terminal S-isoprenyl...		Potri.001G242400 [exp]	17.72	0.8276
AT3G15000			cobalt ion binding (.1)		Potri.001G393400 [exp]	18.41	0.8241
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.004G042500 [exp]	19.77	0.7717
AT3G56720			unknown protein		Potri.016G036000 [exp]	20.78	0.7032
AT3G53440			Homeodomain-like superfamily p...		Potri.006G280800 [exp]	20.85	0.7859
AT5G66631			Tetratricopeptide repeat (TPR)...		Potri.005G128600 [exp]	22.00	0.7735

Compare expression of checked genes

Potri.015G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.