Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60830 86 / 1e-20 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT3G30530 49 / 4e-07 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G08141 48 / 4e-07 bZIP ATBZIP75 basic leucine-zipper 75 (.1) AT5G38800 45 / 4e-06 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT5G15830 45 / 5e-06 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT2G04038 40 / 0.0004 bZIP ATBZIP48 basic leucine-zipper 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111100 [exp] 68 / 6e-14 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.010G135200 [exp] 63 / 4e-12 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.008G113400 [exp] 59 / 1e-10 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.017G106700 [exp] 57 / 5e-10 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1) Potri.002G115900 [exp] 40 / 0.0004 AT1G59530 76 / 5e-18 basic leucine-zipper 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029101 [exp] 51 / 1e-07 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10013059 [exp] 49 / 6e-07 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.015G047700.1 pacid=42776347 polypeptide=Potri.015G047700.1.p locus=Potri.015G047700 ID=Potri.015G047700.1.v4.1 annot-version=v4.1 ATGGAGCCGCATGAAATCAAGAAATTCCATGGTCTGCCTCAGGCAAACTTGGTTCATAATCTATTCACTTTCCCTAATCCCATACAGAAACAATATCCTT CTGCGGCCAGCCTGAAAATGCAGCCCATTGTTGAATCCACTAACCACACCCCAACCCAGGCAAATATATCTGAAAATCCAGAATCCAGCTCAAGTCTCTT CGATAAGTTCTTAACCAATTCTCTAATTCATGTCCCACTTCATATTCCCTCTCCAAACACATCATCTGTCAGTACAGACTCTACTCTAGCTGAACCAAGA GATCAACAGCTCGGTATTTCCAACGAGAAGAAGCTAAGGAGGATGATATCCAACAGAGAATCCGCTCGAAGATCGCGTATGCGAAGAAAGAAGCAAATTG AAGATCTCCAGTATCGGGTTAATCAGCTTCAAAACATGAACCATCAGCTCTCTGAGAAGGTTATCCACTTACTAGAAAGTAACCACCAGACTCTTCAAGA GAATTCCCAACTCAAAGAAAAAGTTTCTTCTCTTCAAGTTGTTCTATCTGACCTGTTGACACCTTTGAGAAATGTGGACGACGGCGATTGCAACAGCATT CATCTCAAAGGTGAAACTTCAAACCGATGA
AA sequence Show only first row Show all	>Potri.015G047700.1 pacid=42776347 polypeptide=Potri.015G047700.1.p locus=Potri.015G047700 ID=Potri.015G047700.1.v4.1 annot-version=v4.1 MEPHEIKKFHGLPQANLVHNLFTFPNPIQKQYPSAASLKMQPIVESTNHTPTQANISENPESSSSLFDKFLTNSLIHVPLHIPSPNTSSVSTDSTLAEPR DQQLGISNEKKLRRMISNRESARRSRMRRKKQIEDLQYRVNQLQNMNHQLSEKVIHLLESNHQTLQENSQLKEKVSSLQVVLSDLLTPLRNVDDGDCNSI HLKGETSNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60830	bZIP	ATBZIP70	basic leucine-zipper 70 (.1)		Potri.015G047700 [exp]	0	1
					Potri.013G011550 [exp]	12.92	0.9110
AT5G05800			unknown protein		Potri.007G118701 [exp]	26.55	0.9014
AT2G28490			RmlC-like cupins superfamily p...		Potri.001G259208 [exp]	28.84	0.9008
AT3G11290			unknown protein		Potri.001G256500 [exp]	50.47	0.8963
					Potri.013G071200 [exp]	50.73	0.8979
AT5G05800			unknown protein		Potri.001G391600 [exp]	57.96	0.8929
					Potri.006G174801 [exp]	61.91	0.8859
AT1G22240		APUM8	pumilio 8 (.1)		Potri.001G457700 [exp]	67.19	0.8890
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Potri.014G056300 [exp]	70.97	0.8882
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.003G081066 [exp]	74.89	0.8887

Compare expression of checked genes

Potri.015G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.