Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08139 201 / 4e-60 RING/U-box superfamily protein (.1) AT5G60820 180 / 1e-51 RING/U-box superfamily protein (.1) AT5G15820 140 / 1e-37 RING/U-box superfamily protein (.1) AT3G02340 140 / 8e-37 RING/U-box superfamily protein (.1) AT3G19950 122 / 6e-31 RING/U-box superfamily protein (.1) AT5G01980 122 / 5e-30 RING/U-box superfamily protein (.1) AT5G64920 105 / 5e-25 CIP8 COP1-interacting protein 8 (.1) AT5G20910 101 / 1e-23 AIP2 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) AT3G13430 100 / 3e-23 RING/U-box superfamily protein (.1.2.3) AT2G40830 99 / 8e-23 RHC1A RING-H2 finger C1A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065300 [exp] 608 / 0 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 135 / 1e-35 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 132 / 1e-34 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 122 / 2e-31 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 120 / 1e-30 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.016G141600 [exp] 112 / 2e-27 AT5G01980 226 / 1e-69 RING/U-box superfamily protein (.1) Potri.006G112100 [exp] 110 / 1e-25 AT5G01980 293 / 1e-92 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 100 / 4e-23 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.013G060500 [exp] 99 / 2e-22 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008874 [exp] 330 / 7e-109 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10023235 [exp] 328 / 3e-108 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10031422 [exp] 129 / 8e-34 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10010179 [exp] 122 / 2e-31 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10013397 [exp] 96 / 2e-21 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10040783 [exp] 94 / 3e-21 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10002637 [exp] 94 / 9e-21 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10030755 [exp] 93 / 1e-20 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10034667 [exp] 92 / 3e-20 AT5G20910 391 / 2e-137 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10040278 [exp] 90 / 3e-20 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.015G047900.2 pacid=42776424 polypeptide=Potri.015G047900.2.p locus=Potri.015G047900 ID=Potri.015G047900.2.v4.1 annot-version=v4.1 ATGGCAAATATCTCCTTCCGCCACCGCGACGCCGACGCCGACACCAACACCAACACCAACACCAACGCCAACGGCCAAACCTCAACCGTAGACCCTTATT TTCCTATCTTATTTTCCTCTCTCTACGACGACCCCTTCCTTCCTCTACCTGAGCTTACCACCCATTTCAACATCCACTCTCTGTCACACCAAGAAGACGA CACCGTTTCAGATCCTGAATCCGTTATCCTCAACGGTCCCGATCTCTTAGACCGCGAGAACCAGGTCAGTTTCGTTATGGATTTGTTTCAACAACGTGTC GAGCAGTCCCAACTGCTTTGTGATGATGATGATGTTTGTTCCTCGCTTAACGAGTCGGGTTTCGGTGTTATCCAGGAGAATTCTGAATATAATTTAGAGC TTGATTTGGGATTAGGGTTTAGTTTAGATAGTCAAGATAATTCTGGATTTCAAAATATAGACGCTAATTCTAATAGTAATGGCAATGATGTTGTTTATAA TGTTAGTAATATTATTGTTGATGATGATGATGATTTCTTTATTGAGAGGAGTGTTTCTGGAATTGAATCATGTCAGGCTGAGTCTACTGTGAGTATTCGT GCTAATGCAATCCGGGTTGTTGGGTTCGGGTCTGATTCGGATTCGGAGGATAATCAGAATTCTTTAGCTATTGATTTTAATTCTGGGGATGATTATGGTT TGGATGTGAGTATAGGGAATGGAAGTTTTGGTGATGGTGTTGACTATGATGACGCTAGGGTTACAATTCCGCTTTGTTGGGACTCACTTCAATTGGAGGA TCATAGGGAAAACAATGAGGATTTTGAGTGGGAGGAAGTGGATGGTCGTCTTGATGAGAGGGAGGTTCTAAGTATGTTTATTGATGAAGATGAGGCATCT GTTTCACTTTCCATTTCACCTCTTATTGCTCCTGAGGATTTGGTCAGTGTAGAGAGAGTAGGAGGATTGGATCATTTGGAGTGGCAGGTTTTATTGAATG CTAACAACTTGGACCACGACCATAATTCTGAGCCTTATTCTGGCAGTCATGATGATTATATTTATACAGCAGAGAGTGAGATGTTATTTGGGCAATTTAC AGAGAATGAGAATGCGATGATGGGTCAGCCTCCTGCAACAAAGTCTGTTGTTGAGAAACTTCCATCAGTGGTTTTCACAAAAGAGGATGTGGAGAGTAAT AATGCACTTTGTGCGGTTTGCAAGGATGATATAAATGTGGGGGAGAGAGTGAAGCAGTTGCCTTGCTTGCACCGGTATCATGGTGAATGCATTGTGCCAT GGCTGGGGATTAGGAATACTTGTCCTGTTTGTCGGTATGAGTTGCCAACAGATGATGCAGATTATGAACAGAGAAAGATGGCTGAAACTTCTGCTGACCA TCATCTTTGA
AA sequence Show only first row Show all	>Potri.015G047900.2 pacid=42776424 polypeptide=Potri.015G047900.2.p locus=Potri.015G047900 ID=Potri.015G047900.2.v4.1 annot-version=v4.1 MANISFRHRDADADTNTNTNTNANGQTSTVDPYFPILFSSLYDDPFLPLPELTTHFNIHSLSHQEDDTVSDPESVILNGPDLLDRENQVSFVMDLFQQRV EQSQLLCDDDDVCSSLNESGFGVIQENSEYNLELDLGLGFSLDSQDNSGFQNIDANSNSNGNDVVYNVSNIIVDDDDDFFIERSVSGIESCQAESTVSIR ANAIRVVGFGSDSDSEDNQNSLAIDFNSGDDYGLDVSIGNGSFGDGVDYDDARVTIPLCWDSLQLEDHRENNEDFEWEEVDGRLDEREVLSMFIDEDEAS VSLSISPLIAPEDLVSVERVGGLDHLEWQVLLNANNLDHDHNSEPYSGSHDDYIYTAESEMLFGQFTENENAMMGQPPATKSVVEKLPSVVFTKEDVESN NALCAVCKDDINVGERVKQLPCLHRYHGECIVPWLGIRNTCPVCRYELPTDDADYEQRKMAETSADHHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08139			RING/U-box superfamily protein...		Potri.015G047900 [exp]	0	1
AT1G15130			Endosomal targeting BRO1-like ...		Potri.008G126900 [exp]	4.00	0.8744
					Potri.019G129780 [exp]	6.48	0.8835
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.012G022100 [exp]	9.94	0.8424
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.015G005500 [exp]	14.07	0.7944
					Potri.012G114166 [exp]	14.17	0.8675
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.010G193000 [exp]	15.16	0.8055
					Potri.004G202050 [exp]	15.71	0.8381
					Potri.019G059350 [exp]	16.97	0.8486
AT4G32020			unknown protein		Potri.006G260000 [exp]	21.77	0.7895
					Potri.012G052502 [exp]	24.24	0.8380

Compare expression of checked genes

Potri.015G047900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.