Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08130 360 / 2e-117 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G69010 212 / 1e-63 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G38860 144 / 1e-38 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT1G63650 55 / 1e-07 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G24260 52 / 6e-07 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G28790 52 / 6e-07 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G67110 50 / 8e-07 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G30980 51 / 1e-06 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G22750 50 / 2e-06 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22770 50 / 3e-06 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065000 [exp] 865 / 0 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.008G112000 [exp] 265 / 1e-83 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.010G137600 [exp] 248 / 3e-77 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.004G112900 [exp] 230 / 4e-70 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.017G101700 [exp] 217 / 3e-65 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.003G164500 [exp] 53 / 2e-07 AT5G50915 134 / 1e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G208600 [exp] 54 / 3e-07 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G139700 [exp] 52 / 6e-07 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G066500 [exp] 52 / 1e-06 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013502 [exp] 416 / 2e-139 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10007974 [exp] 261 / 2e-79 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10026684 [exp] 210 / 1e-62 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10004630 [exp] 196 / 3e-57 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10034358 [exp] 182 / 3e-52 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10005091 [exp] 161 / 3e-43 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10042572 [exp] 50 / 6e-07 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021846 [exp] 50 / 3e-06 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10024811 [exp] 50 / 3e-06 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028978 [exp] 49 / 3e-06 AT2G40200 157 / 8e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G048000.2 pacid=42775486 polypeptide=Potri.015G048000.2.p locus=Potri.015G048000 ID=Potri.015G048000.2.v4.1 annot-version=v4.1 ATGGAGCTTCCTCAACAACGTCCTTTCGGAACTGAAGGAAGGAAACCAACACACGACTTTCTTTCACTGTACAGTCATTCCTCAACCGTGCAACAAGATC CAAGACCACCTTCTCAAGGTGGCTTCCTCCAGACACATGATTTTCTACAACCACTAGAACAAGTAAGCAAAGCCACCGCCAGAGAAGAAACCAACGTTGA GATCTTGACAATTGAGAAGCCACCGCCTCCGGCACCACCACCCTCGGTGGAGCACACCCTCCCTGGAGGCATCGGGACGTACAGTATAAGCCACGTATCG TATTTCAACCAACGAGTTCCAAAGCCAGAAAACACAATATTCTCCGTAGCTCAAGCTAGTAGTACCGATAAAAATGATGAGAATTCCAACTGCAGTTCTT ATTCAGCTAGTGGATTCACACTTTGGGAAGAATCCACATTGAAAAAGGGAAAGACAGGGAAGGAGAATGTGGGAGAAAGATCCAATATTATCAGAGAAGC GGCAGCGAAGACGGATCAGTGGACGACGTCAGAGAGGCCGTCACAGTCTTCATCGAACAACCATCGCAATAGTTTCAGCTCTCTTTCTTCCTCACAGCCA CCAGGGCTGAAATGTACCCAGAGCTTCATAGAAATGATAAAGTCAGCCAAAGGTAGTAACTTGGACGATGATTTAGACGATGAAGAAACGTTCCTCCTTA AGAAAGAAACCCCTTCTCCTATCCATAAAGGTGTGCGTGTGTGGATAGAAAATAAATGTATAAAAATTCTCTTATTTGAAAAAAAAAAAGTAGTATTATG TGTGCTCTGTTTGAGTTACATGTTTGTGGAATTGAGGACTTTGTTCTTTCTTTTTTCAGGGGAATTGAGGGTAAAGGTGGACGGAAAGAGCAATGACCAA AAACCTAACACGCCTCGGTCAAAGCATTCTGCAACAGAACAACGTAGGAGGAGCAAGATAAATGACAGATTTCAGATGTTGAGAGCGCTCATTCCTCATG GCGATCAAAAGAGAGACAAGGCATCTTTTCTTTTAGAGGTCATCGAGCACGTTCAGTTTCTACAGGAGAAAGTACAGAAATATGAAGGATCATACCAAGG ATGGAACCACGAACATGCAAAACTGGGGCCATGGAGAAACAATAGTAGGCCTGTGGAAAGTTCTGTTGACCAGTCTCGAGGCGTGAATAGTGGTGTTGGT CCTGCATTATTGTTTGCTGCAAATTTAGATGAGAAAAACATAACCATTTCTCCTTCCATTAATCCTGGAGGAGCACGGAATGCAGTCGAATCTAATATGA GCTCTGCTAGTACCTTCAATGCAATGGATCACCATCCGAACCTCGGAATAACAAATAAAGCAATGCCATTTCCTATCTCGCTGCAGCCGAACCTCTTCCA TCCTGGCAGGATCGCAGGTGCAGCAGCACAGTTTCCACCCCGACTGGCATTTGATGCGGAGAACACGGCAACTCAACCTCAACCATGCCATGCAATATCA TGTACCTCTGACGGGGCTGTTGCTAGTGATAAGCTGAAACAACAGAATCTGACTGTTGAAGGTGGTACAATCAGCATCTCTACCGCGTACTCTCAAGGGT TGTTAAATACTTTGACGCAAGCTTTACAGAGTTCTGGAGTAGACTTGTCTCAGGCCACCATCTCAGTGCAGATAGAGCTCGGGAAAAAAGGGAATAGTAG ACAAACTGCGCCAACATCCATTGTTAAGGATAATAACGTCCCCCCTAGCAATCAAGGCACAATACGTTCAAGAGTTTCAAGCGGTGAAGAATCTGATCAA GCCCTGAAGAAGCTCAAGACAAGTAAAGGATAG
AA sequence Show only first row Show all	>Potri.015G048000.2 pacid=42775486 polypeptide=Potri.015G048000.2.p locus=Potri.015G048000 ID=Potri.015G048000.2.v4.1 annot-version=v4.1 MELPQQRPFGTEGRKPTHDFLSLYSHSSTVQQDPRPPSQGGFLQTHDFLQPLEQVSKATAREETNVEILTIEKPPPPAPPPSVEHTLPGGIGTYSISHVS YFNQRVPKPENTIFSVAQASSTDKNDENSNCSSYSASGFTLWEESTLKKGKTGKENVGERSNIIREAAAKTDQWTTSERPSQSSSNNHRNSFSSLSSSQP PGLKCTQSFIEMIKSAKGSNLDDDLDDEETFLLKKETPSPIHKGVRVWIENKCIKILLFEKKKVVLCVLCLSYMFVELRTLFFLFSGELRVKVDGKSNDQ KPNTPRSKHSATEQRRRSKINDRFQMLRALIPHGDQKRDKASFLLEVIEHVQFLQEKVQKYEGSYQGWNHEHAKLGPWRNNSRPVESSVDQSRGVNSGVG PALLFAANLDEKNITISPSINPGGARNAVESNMSSASTFNAMDHHPNLGITNKAMPFPISLQPNLFHPGRIAGAAAQFPPRLAFDAENTATQPQPCHAIS CTSDGAVASDKLKQQNLTVEGGTISISTAYSQGLLNTLTQALQSSGVDLSQATISVQIELGKKGNSRQTAPTSIVKDNNVPPSNQGTIRSRVSSGEESDQ ALKKLKTSKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Potri.015G048000 [exp]	0	1
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053900 [exp]	1.41	0.6850
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.002G107300 [exp]	4.24	0.6420
AT5G53750			CBS domain-containing protein ...		Potri.001G402900 [exp]	12.68	0.5818
AT3G13930			Dihydrolipoamide acetyltransfe...		Potri.001G198000 [exp]	13.56	0.5792
AT2G03640			Nuclear transport factor 2 (NT...		Potri.008G096700 [exp]	20.78	0.6196
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	22.73	0.5760
AT1G67480			Galactose oxidase/kelch repeat...		Potri.013G104300 [exp]	26.72	0.5604
AT1G01730			unknown protein		Potri.002G158500 [exp]	34.32	0.5545
AT3G60450			Phosphoglycerate mutase family...		Potri.002G141000 [exp]	41.71	0.5698
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	52.32	0.5255

Compare expression of checked genes

Potri.015G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.