Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65660 830 / 0 SMP1 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) AT4G37120 790 / 0 SMP2 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1) AT3G45950 484 / 2e-169 Pre-mRNA splicing Prp18-interacting factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G064100 [exp] 932 / 0 AT1G65660 801 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022931 [exp] 845 / 0 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10024887 [exp] 840 / 0 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10028956 [exp] 832 / 0 AT1G65660 891 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10030817 [exp] 275 / 1e-80 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10007480 [exp] 157 / 4e-46 AT4G37120 170 / 6e-52 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10007479 [exp] 122 / 3e-33 AT1G65660 124 / 5e-35 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11708 [poplar] [flax] Slu7 Pre-mRNA splicing Prp18-interacting factor
Representative CDS sequence Show only first row Show all	>Potri.015G048200.4 pacid=42775817 polypeptide=Potri.015G048200.4.p locus=Potri.015G048200 ID=Potri.015G048200.4.v4.1 annot-version=v4.1 ATGGCAACCGCATCAGTTGCATTTAAGTCTAGAGAGGACCATAGGAAGCAGATTGAATTGGAAGAAGCGCGTAAAGCTGGGCTTGCCCCTGCTGAGGTTG ATGAGGATGGAAAGGAGATTAATCCTCACATTCCTCAGTATATGTCATCTGCACCTTGGTATCTCAATGCCGAGAAACCTAGTTTGAAACATCAAAGGAA GTGGAAATCAGATCCTAATTATACAAAATCATGGTATGATAGAGGTGCAAAAGTTTTCCAGGCTGAAAAATATAGAAAGGGTGCATGCCTCAACTGTGGA GCTATGACACATGCTGCAAAGTCATGCGTGGAAAGGCCCAGGAAAGTGGGTGCAAAATGGACTAACATACACATAGCCCCTGATGAAAAAATAGAGACTA TTGAACTTGATTATGATGGCAAGCGAGACCGGTGGAATGGTTATGACCCATCAAGCTATAGCCATGTTGTTGAAAGATATGAAGCTCGAGATGCGGCTCG AAGGAAGTATGTGAAGGAACAACAACTTAAAAAATTGGAGGAGAAAAACGGGAACCAAAATGCTGAGGATGGGGTTAATGATGTGGACAATGATGAGGAT GATTTAAGGGTAGATGAAGCCAAGGTTGACGAGAGCAAACAAATGGACTTTGCAAAGGTTGAGAAGCGTGTGCGAACAACAGGTGGTGGGAGCACAGGAA CTGTTAGGAATTTGCGTATTCGTGAGGACACAGCAAAATATCTTTTAAATCTTGATGTTAACTCTGCGCACTATGACCCCAAAACCCGGTCCATGCGTGA GGATCCTCTTCCAGATGCAGATCCAAACGAAAAATTCTACGAGGGAGATAACCAATATAGGAATAGTGGTCAAGCGTTGGAGTTCAAGCATCTCAACATC CATGCTTGGGAGGCATTTGATAAGGGACAAGATATTCACATGCAAGCAGCTCCATCGCAAGCCGAGTTGCTATATAAGAATCATAAGGTCATAAAAGAGA AGTTGAAGACCCGTACAAAGGACACTATTATGGAGAAGTATGGCAATGCGGCTAGTGAAGAGGAAATTCCAAGAGAACTTCTATTGGGACAGAGTGAAAG ACAAGTTGAATATGATCGGGCAGGGCGGATTATCAAGGGGCAGGAGACTGTACTTCCTAGAAGCAAGTACGAAGAAGATGTTTTCATTAATAATCACACA ACCGTGTGGGGGTCATGGTGGAAGGATCATCAATGGGGCTACAAGTGCTGCAAGCAGATGATTCGGAACAGTTATTGCACAGGTGCTGCTGGAATAAAGG CTGCTGAGGCTGCAACTGATCTTATGAAGGCTAATATTGATCGTAAAGAGGCCACTAAAGAGGCACCTGCACCAGTGGAGGAGAAACAGCTTGCTACTTG GGGAACTGAGGTTCCAGAAGATTTAATTTTGGATGAGAAGTTACTCGCTGAAGCGCTTAGAAAGGAAGATGAAAGAAAGAGAGAGGAGAAAGATGAGAGA AAGCGGAAATACAATGTCAGGTGGAATGATGAGGTTACTGCTGAAGATATGGAGGCATATAGGATGAAGAAAGTCCATCATGACGACCCAATGAAGGATT TCCTCCATTAA
AA sequence Show only first row Show all	>Potri.015G048200.4 pacid=42775817 polypeptide=Potri.015G048200.4.p locus=Potri.015G048200 ID=Potri.015G048200.4.v4.1 annot-version=v4.1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKPSLKHQRKWKSDPNYTKSWYDRGAKVFQAEKYRKGACLNCG AMTHAAKSCVERPRKVGAKWTNIHIAPDEKIETIELDYDGKRDRWNGYDPSSYSHVVERYEARDAARRKYVKEQQLKKLEEKNGNQNAEDGVNDVDNDED DLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYEGDNQYRNSGQALEFKHLNI HAWEAFDKGQDIHMQAAPSQAELLYKNHKVIKEKLKTRTKDTIMEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIKGQETVLPRSKYEEDVFINNHT TVWGSWWKDHQWGYKCCKQMIRNSYCTGAAGIKAAEAATDLMKANIDRKEATKEAPAPVEEKQLATWGTEVPEDLILDEKLLAEALRKEDERKREEKDER KRKYNVRWNDEVTAEDMEAYRMKKVHHDDPMKDFLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.015G048200 [exp]	0	1
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Potri.013G151600 [exp]	1.00	0.8403	CDC48.4
AT4G20020			unknown protein		Potri.004G218650 [exp]	4.89	0.8293
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	8.94	0.7862
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	9.16	0.8075
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	9.21	0.7541
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G271200 [exp]	16.49	0.7896
					Potri.007G113400 [exp]	16.61	0.7771
AT1G27090			glycine-rich protein (.1)		Potri.008G194200 [exp]	17.34	0.7115
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	18.89	0.7693
AT5G08780			winged-helix DNA-binding trans...		Potri.005G069700 [exp]	19.23	0.7162

Compare expression of checked genes

Potri.015G048200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.