Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60850 152 / 6e-44 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT5G65590 123 / 1e-32 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 119 / 9e-32 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G51700 114 / 1e-30 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT2G28810 117 / 2e-30 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT2G37590 117 / 3e-30 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT3G45610 115 / 4e-30 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT3G21270 113 / 5e-30 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT1G07640 114 / 9e-30 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT2G28510 114 / 2e-29 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G063800 [exp] 343 / 4e-118 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.011G055600 [exp] 121 / 1e-31 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.004G046600 [exp] 120 / 3e-31 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.001G238400 [exp] 119 / 3e-31 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.005G134200 [exp] 119 / 4e-31 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100 [exp] 118 / 7e-31 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.005G149100 [exp] 119 / 9e-31 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 118 / 1e-30 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.011G054300 [exp] 117 / 2e-30 AT5G60850 119 / 3e-31 OBF binding protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007976 [exp] 169 / 1e-50 AT5G60850 165 / 1e-49 OBF binding protein 4 (.1) Lus10034652 [exp] 131 / 6e-36 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10017882 [exp] 130 / 8e-36 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10025707 [exp] 119 / 1e-30 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10040305 [exp] 119 / 2e-30 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10016566 [exp] 117 / 3e-30 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10014002 [exp] 114 / 3e-30 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10029458 [exp] 114 / 3e-29 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10015425 [exp] 113 / 4e-29 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10014001 [exp] 113 / 4e-29 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.015G048300.1 pacid=42776130 polypeptide=Potri.015G048300.1.p locus=Potri.015G048300 ID=Potri.015G048300.1.v4.1 annot-version=v4.1 ATGCAAGACACCCACTCAATTGGTGGCGGAGGCAGGTTATTTAGCGGTGGAGGTGGGGGTGACAGGCGACTACGGCCACACCACCACCAGAACCACCAAG CATTAAAGTGCCCACGATGTGACTCGCTGAACACGAAATTCTGTTACTACAACAACTACAACCTCTCTCAGCCTCGTCACTTCTGTAAGAGTTGCCGGCG TTACTGGACTAAAGGCGGTGTCCTCCGCAACGTTCCTGTTGGCGGTGGATGCCGCAAGACCAAGCGGTCTAAGCTTAAACAAAACACACCAAGTACAACT TCTGATGCAATTACAACCTCCAGTACTAGACCGCAGGAGCTACAGGAACAACATCAGCGACGAGATCATATGTCCTCCAACTCTCATTCTAGTAGTGAGA GTTCGAGTCTTACGGCTACAAATAACACGAATGCAAATACAGCAGTGGAAGCAGTGTCTGCGCTTTCTGTAAACTCTGTTTCCAATAATTTATTAAATGG TATTGTTGAGTCCAAAATCTTTCCACGTGGGGATATGAATCCCAGTTTCGAACCTGCTTTGCTCGAGCAAGGATCGGACTGTGGGATTTTCTCGGAGATT GGGAGTTTCACAAGCTTGATCACATCGACGAACGACTTGTCGTTTGGATTTAGCAACACAACGAACCAACAGCAGCAACAAGGGCTTGAGCATCATGTGC AGAACAATCAGAACCAGCAGCAGTGGCAAAATCAGCATCAGGAGATGACAGGAGGAGGGTTGATTGATCAGACGATTCACGCTGAGTTATCAGCTTTGCC GAGTAGTAGTAGATCAACAGAGAATACCGGTGGGGGATTTGGAGCGTTGGATTGGCAGTTAGGGAGTGGAGATCAAGCTGGTGGGTTTTTTTATCTTCCT AATACCGTTGATCAAGCTTACTGGAGTCAGAGCCAATGGAATGATATGACTGCTTACCTCCCGTAA
AA sequence Show only first row Show all	>Potri.015G048300.1 pacid=42776130 polypeptide=Potri.015G048300.1.p locus=Potri.015G048300 ID=Potri.015G048300.1.v4.1 annot-version=v4.1 MQDTHSIGGGGRLFSGGGGGDRRLRPHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSKLKQNTPSTT SDAITTSSTRPQELQEQHQRRDHMSSNSHSSSESSSLTATNNTNANTAVEAVSALSVNSVSNNLLNGIVESKIFPRGDMNPSFEPALLEQGSDCGIFSEI GSFTSLITSTNDLSFGFSNTTNQQQQQGLEHHVQNNQNQQQWQNQHQEMTGGGLIDQTIHAELSALPSSSRSTENTGGGFGALDWQLGSGDQAGGFFYLP NTVDQAYWSQSQWNDMTAYLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.015G048300 [exp]	0	1
AT1G76560		CP12-3	CP12 domain-containing protein...		Potri.002G002700 [exp]	1.41	0.7901
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.004G089800 [exp]	9.69	0.7639
AT2G01680			Ankyrin repeat family protein ...		Potri.008G134500 [exp]	9.74	0.7134
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Potri.004G038800 [exp]	11.22	0.7054
AT4G34200		EDA9	embryo sac development arrest ...		Potri.002G122700 [exp]	13.11	0.7168
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.012G063800 [exp]	13.71	0.6471
					Potri.014G052766 [exp]	14.83	0.6936
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.016G006100 [exp]	19.74	0.6602
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.003G146300 [exp]	22.95	0.6599
AT1G11700			Protein of unknown function, D...		Potri.004G015700 [exp]	25.78	0.6794

Compare expression of checked genes

Potri.015G048300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.