Plant FIBer expression Database

Potri.015G048400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03810 63 / 1e-10 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
AT5G60880 44 / 7e-05 BASL breaking of asymmetry in the stomatal lineage (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G111800
[exp]
72 / 1e-13 AT2G03810 84 / 4e-17 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Potri.010G138100
[exp]
72 / 1e-13 AT2G03810 93 / 3e-20 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Potri.015G048600
[exp]
41 / 0.0007 AT5G60880 87 / 4e-20 breaking of asymmetry in the stomatal lineage (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036829
[exp]
65 / 2e-11 AT2G03810 97 / 7e-22 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10026682
[exp]
54 / 1e-07 AT2G03810 100 / 9e-23 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10004632
[exp]
45 / 8e-05 AT2G03810 102 / 3e-24 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10019193
[exp]
42 / 0.0008 AT2G03810 50 / 1e-06 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.015G048400.6 pacid=42775122 polypeptide=Potri.015G048400.6.p locus=Potri.015G048400 ID=Potri.015G048400.6.v4.1 annot-version=v4.1
ATGGAGTATGTTGATGAAAGACAAGCCGGTGAATCCACGTGTGGGTGTTCAACCATGGCCAGTAAGCCTCATTACAAGTCTTTCAAATTCATCGACAACT
CTCGGGAGATAAGAGGATTGGAAGGGGATAAGGGTACTGCTTTAGAACTACATAGACAGAAGGGAGAGGCAGTGGCCAGAAACCAACCAGGAGTAGATGC
CTTTATGGCTTGGGTGAATCCTGTACATGGAACAGAATATCCAACCAGCCTCAGTGAATTGGAAGAAAGTAGAGGAAGAAGGAAGATTTATATTAAAAGC
AATGTGATGGATTCTGACATGCCAGAGATGGTTGCCTTTTTTCAAGACAGCAATTATCATTTTGTGAAGGACATTTTCATGGATGGAGAAGTTCACTGCA
AGGATATCTGTTCCGTTGAAAATTGCCAATTAGACCACAATAGTATCTCTTCCATACTTAACTTTGATGTAGAAAGTTGCAGTGCATCAACCGTTGGAAC
TCAGGATTCAGTTCCATCCATTTCAAATGAGTCAAAATATATGGAAGATGATGACTGCCATAATCTTTTGATCAATCAACATGGTTCCAGAATGTCGATG
AAAGATTTTGATGGACAAGAATATGTTTTGGTAGAAAAGAACGTACATGGATCTCATATGGTTAAAAAGGTTCCAAGTAAGGAAGCAATACTGTCAAGCT
CCATTGTATTATACACAACTGAAGAAGTTTATTATGACTGCCCTACGAGTGCAGCCACTTTCAGAAATGAGGTGGACGACACAATAAGAAACACAGAGGC
AGATTTTGAACAGGTCGTTGAAACTGAAAGTATGTCCAAGCCTGAAGATGGGATGTCAGGAACCTTAACAAGTTCAAGTCGAAGTTTGGGTGATGAGAAT
GTTCAAGGAGAGTCGAGTTTCTTTGCTGTTGATCCCCCTCCAGGCCTGACCTACTCAGAAGGTCCTATATATTGTGGAAGTGTCAGCTCGCATTCGTTTG
CTTTTCCCATATTGCCCTCAGAATGGGATGGCAGTCCTGAAAGAATGGCAAGCACTGACCAAGTACAATTTCGAAGGCATCAGCGTTGGAGAATGCGTTT
TCTTTGTTGCAAATTCTGA
AA sequence
>Potri.015G048400.6 pacid=42775122 polypeptide=Potri.015G048400.6.p locus=Potri.015G048400 ID=Potri.015G048400.6.v4.1 annot-version=v4.1
MEYVDERQAGESTCGCSTMASKPHYKSFKFIDNSREIRGLEGDKGTALELHRQKGEAVARNQPGVDAFMAWVNPVHGTEYPTSLSELEESRGRRKIYIKS
NVMDSDMPEMVAFFQDSNYHFVKDIFMDGEVHCKDICSVENCQLDHNSISSILNFDVESCSASTVGTQDSVPSISNESKYMEDDDCHNLLINQHGSRMSM
KDFDGQEYVLVEKNVHGSHMVKKVPSKEAILSSSIVLYTTEEVYYDCPTSAATFRNEVDDTIRNTEADFEQVVETESMSKPEDGMSGTLTSSSRSLGDEN
VQGESSFFAVDPPPGLTYSEGPIYCGSVSSHSFAFPILPSEWDGSPERMASTDQVQFRRHQRWRMRFLCCKF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03810 18S pre-ribosomal assembly pro... Potri.015G048400
[exp]
0 1
AT1G54820 Protein kinase superfamily pro... Potri.013G025700
[exp]
1.00 0.9203
AT4G24250 ATMLO13, MLO13 MILDEW RESISTANCE LOCUS O 13, ... Potri.003G151750
[exp]
2.82 0.8480
AT5G63180 Pectin lyase-like superfamily ... Potri.011G093400
[exp]
31.84 0.8062
AT4G25960 ABCB2, PGP2 ATP-binding cassette B2, P-gly... Potri.001G139700
[exp]
32.21 0.8052
AT3G21870 CYCP2;1 cyclin p2;1 (.1) Potri.007G121500
[exp]
39.77 0.8445
AT1G44000 unknown protein Potri.002G075700
[exp]
52.12 0.8428
AT4G20970 bHLH bHLH162 basic helix-loop-helix (bHLH) ... Potri.019G034700
[exp]
139.61 0.7918
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Potri.010G237600
[exp]
188.80 0.8092
AT1G61050 alpha 1,4-glycosyltransferase ... Potri.011G047700
[exp]
208.62 0.8086
AT1G02800 ATCEL2 cellulase 2 (.1) Potri.003G147600
[exp]
229.12 0.7824

Potri.015G048400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.