Plant FIBer expression Database

Potri.015G048600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60880 88 / 2e-20 BASL breaking of asymmetry in the stomatal lineage (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017880
[exp]
95 / 8e-23 AT5G60880 72 / 9e-15 breaking of asymmetry in the stomatal lineage (.1.2)
Lus10034654
[exp]
95 / 9e-23 AT5G60880 90 / 4e-21 breaking of asymmetry in the stomatal lineage (.1.2)
PFAM info
Representative CDS sequence
>Potri.015G048600.1 pacid=42774887 polypeptide=Potri.015G048600.1.p locus=Potri.015G048600 ID=Potri.015G048600.1.v4.1 annot-version=v4.1
ATGTCCACACCATTGACTATGACCAGGCTTGTTAGATGGAGAGTGAGGGACTGGGCGTCCTGTTTCTTGGCTTGCAGGTTTTCTTTAGATGATGAACAGG
AAACGTTTCCCAATTCATCATCTAAACTGCCAATCAGAAACATGGTTTTTGGCGTGAAAAAAGACAGTACTAGAGGTGGCAATAAAAGAAACAAAAAATT
ATCGAAAAAAAATAAAAAATTCAGACAGGTAAATCCTGGTTCAACACAGGCTACTGTTGACAGTAGTGTTTCAGTGCAAAATTGTAATAGCAGGGACTCA
TGCCGGCCCCACTTGCAAGATGAGGAATACATTGTTTTTTGTTTTGGAGAGGATGGTGGTTTTGATGTTGTGAAAGAATGCAAGTCGCCAGAAACATTTC
TTCATTTCACTGCTAATAATACAAGTCCAAGGTCTGTCAATCGAAAGCTTCACTGTGTAGAGGTAGAGGTTTCAGAAACAGTTAGGAAGAGCAGCCATCA
GAGGAAGTCAATTGTTGCAAATGGACATGAGACAGAGATGACTCCTGTTAAAAACGAGGAGGAAGCAGCTGACAGCCATTCGGGTCTAGACCCGCCTTGT
AATGCTAGAACAAGGTGGTGCCATATTGGAGAGATTGACAATTGCGGGACGGTATCTGCTAAATCTAGCGACTCAAATCAATCAGATGGAAGCAGTACAG
GATCTTTTTCCTTTCCAGTAATGCATTGGGAGTTGATAGGCAGTCCTGTGCAAATGCCAAAATCAGAGAGCCTTCATGCAAGGAAGCACAAGGCCCCCTG
TGCTCGTTTTCAATGTTGTAGATTCTGA
AA sequence
>Potri.015G048600.1 pacid=42774887 polypeptide=Potri.015G048600.1.p locus=Potri.015G048600 ID=Potri.015G048600.1.v4.1 annot-version=v4.1
MSTPLTMTRLVRWRVRDWASCFLACRFSLDDEQETFPNSSSKLPIRNMVFGVKKDSTRGGNKRNKKLSKKNKKFRQVNPGSTQATVDSSVSVQNCNSRDS
CRPHLQDEEYIVFCFGEDGGFDVVKECKSPETFLHFTANNTSPRSVNRKLHCVEVEVSETVRKSSHQRKSIVANGHETEMTPVKNEEEAADSHSGLDPPC
NARTRWCHIGEIDNCGTVSAKSSDSNQSDGSSTGSFSFPVMHWELIGSPVQMPKSESLHARKHKAPCARFQCCRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G60880 BASL breaking of asymmetry in the s... Potri.015G048600
[exp]
0 1
AT5G65160 TPR14 tetratricopeptide repeat 14, t... Potri.007G091200
[exp]
2.64 0.9285
AT1G80370 CYCA2;4 Cyclin A2;4 (.1) Potri.001G177100
[exp]
5.83 0.9475
AT2G33793 unknown protein Potri.004G042800
[exp]
7.74 0.9394
AT1G14390 Leucine-rich repeat protein ki... Potri.001G147700
[exp]
7.74 0.9255
AT5G65160 TPR14 tetratricopeptide repeat 14, t... Potri.005G166300
[exp]
8.88 0.8824
AT1G11000 ATMLO4, MLO4 MILDEW RESISTANCE LOCUS O 4, S... Potri.004G218500
[exp]
9.38 0.9127 MLO4.1
AT2G33400 unknown protein Potri.010G067300
[exp]
10.67 0.9415
AT3G19184 B3 AP2/B3-like transcriptional fa... Potri.009G103200
[exp]
10.81 0.9410
AT1G26760 SDG35, ATXR1 SET domain protein 35 (.1) Potri.008G089500
[exp]
12.64 0.9400 SDG942
AT3G61640 AGP20, ATAGP20 arabinogalactan protein 20 (.1... Potri.014G094800
[exp]
13.67 0.9270 AGP20.1

Potri.015G048600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.