Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03800 421 / 5e-149 GEK1 GEKO1, D-aminoacyl-tRNA deacylases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036828 [exp] 398 / 7e-140 AT2G03800 452 / 3e-161 GEKO1, D-aminoacyl-tRNA deacylases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [poplar] [flax] PUP PF04414 [poplar] [flax] tRNA_deacylase D-aminoacyl-tRNA deacylase
Representative CDS sequence Show only first row Show all	>Potri.015G048700.2 pacid=42776441 polypeptide=Potri.015G048700.2.p locus=Potri.015G048700 ID=Potri.015G048700.2.v4.1 annot-version=v4.1 ATGGTGATCCTGTTGGTGGCGACCACCTCAGATCCGGCATCCATAGGCCCAGCCTCGGCTCTTCTAGCCATGCCCGGTTGGCACGCTGGCCCCTCCTTGC AGGATGCCGTAAGTTTTGTAAACAAGGAAGTGAGGCTAATAAAAGTGGATAACAGTCTTGTTAAGGAGGATCACTTAGATAAACGTTGGGAGGAGGCAAC CGGCGAGTTAGTCGATGAGATCATTTTTCTTAGCAAGCATGCTGCTTCTTCTAGTCGGCCAGCTCTTACGGTCCATCCAATTGGTACTCCACATATTAGT GAAGGAGAGGTTCTTGTTGCTGGTGGGAAGCCAGGATGGGCAGCACCTCCAAATCCTCGGATAGGACCATGGTTGAGGCTCTTGAGGACTATTGCTGAAT CACAAAAACTAACTCCTGAATTCGAGGTTACATTAGAAGCCACACATCATGGGCCATTAACTAATTCGCCAACCATGTTTGTGGAGATTGGTAGCACAGA AGAATACTGGAGGAGGCAGGATGCTGCACAGGCCATTGCATTGTTAGTCTGGGAAGGATTGGGTCTTGGAGGAGGAATTGCTGAGGGAGACTGGGGCAGG AATGGTGGTAGCAACAAAATCCTTCTTGGAATAGGTGGCGGGCATTATGTGCCCCGGCACATGGACATTGTTCTAAAAGATGGTGTTTGGGTAGGCCATT TGCTTTCTGGATACTCCTTGCCGATGGAAGATCCTGGTCAATCAAAAACACAACTAAATACTGAGGCTGTGCACGGAACTTGGAGAGAATCAATCAAAGT TGCATTTGAAGCTACCAAATCAGCTTTCCCTGGGGGAGAAATTCTAGCACATCTTGATCACAAGAGTTTCAAGAGCTGGCAGAGGACTGCCGTCACAACT TTCTTGGTGGAGCAGAACATAAAGATTGGGAAAGCCAGTGACTTTTCTTAA
AA sequence Show only first row Show all	>Potri.015G048700.2 pacid=42776441 polypeptide=Potri.015G048700.2.p locus=Potri.015G048700 ID=Potri.015G048700.2.v4.1 annot-version=v4.1 MVILLVATTSDPASIGPASALLAMPGWHAGPSLQDAVSFVNKEVRLIKVDNSLVKEDHLDKRWEEATGELVDEIIFLSKHAASSSRPALTVHPIGTPHIS EGEVLVAGGKPGWAAPPNPRIGPWLRLLRTIAESQKLTPEFEVTLEATHHGPLTNSPTMFVEIGSTEEYWRRQDAAQAIALLVWEGLGLGGGIAEGDWGR NGGSNKILLGIGGGHYVPRHMDIVLKDGVWVGHLLSGYSLPMEDPGQSKTQLNTEAVHGTWRESIKVAFEATKSAFPGGEILAHLDHKSFKSWQRTAVTT FLVEQNIKIGKASDFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03800		GEK1	GEKO1, D-aminoacyl-tRNA deacyl...		Potri.015G048700 [exp]	0	1
AT3G48140			B12D protein (.1)		Potri.008G179401 [exp]	1.41	0.7646
AT5G36930			Disease resistance protein (TI...		Potri.005G004500 [exp]	6.00	0.6356
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.010G072400 [exp]	6.63	0.6766
AT3G23220	AP2_ERF	ESE1	ethylene and salt inducible 1,...		Potri.010G072600 [exp]	10.19	0.6653
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.009G155800 [exp]	16.12	0.5959
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.011G051600 [exp]	26.19	0.6329
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Potri.006G229900 [exp]	33.40	0.5979
					Potri.017G153100 [exp]	37.66	0.6139
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G066200 [exp]	38.92	0.5909
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039100 [exp]	39.54	0.5870

Compare expression of checked genes

Potri.015G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.