Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07830 731 / 0 ATGUS2 glucuronidase 2 (.1) AT5G61250 712 / 0 ATGUS1 glucuronidase 1 (.1.2) AT5G34940 479 / 5e-165 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160800 [exp] 565 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.018G121500 [exp] 500 / 4e-173 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 497 / 1e-171 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 487 / 9e-168 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015737 [exp] 758 / 0 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 735 / 0 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 734 / 0 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 723 / 0 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 528 / 0 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 524 / 0 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 508 / 2e-176 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 496 / 3e-171 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10038109 [exp] 479 / 5e-165 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10037109 [exp] 477 / 9e-165 AT5G61250 503 / 7e-175 glucuronidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF03662 [poplar] [flax] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G049100.8 pacid=42775681 polypeptide=Potri.015G049100.8.p locus=Potri.015G049100 ID=Potri.015G049100.8.v4.1 annot-version=v4.1 ATGGAATTTAGCTTCTCCCTCCTTTTGTTTTTGGCTTCTTTCCCTGTGATTCTGGCTCAAGAAGGAACACGTGCTACAATTTCTATTGATGGAACTATTG CAGTTGCTGTAATCGATGATAATTTTATTTGTGCTACTCTTGATTGGTGGCCGCATGATAAGTGTAACTACAACCAGTGTCCATGGAGCTATTCATCCGT AACAAACTTGGACTTATCTCATCCTCTTCTTGCCAAAGCCATCCAAGCCTTCAGGAATTTGAGAATAAGAATTGGAGGTTCTTTGCAAGACCAAGTATTG TATGATGTTGAAAGTTTGAAAGCTCCTTGCCATCCATTTAGAAAGATGAAAGGTGGGCTCTTTGGTTTTTCAAAGGGCTGTTTACATATGAACCGGTGGG ATGAACTGAACCATTTATTCAGTAGAACTGGGGCCATTGTGACATTTGGTTTGAATGCCCTCTATGGAAGGCACCAGATTAGGAAGGGTGTTTGGGGAGG AGCTTGGGATTCTAGTAATGCTTGTGATTTCATGAACTACACTGTCTTGAAAGGATACAAGATAGATTCGTGGGAATATGGGAATGAGTTGAGTGGAAGT GGTGTAAGTGCAAGTGTAAGTGCTGAGCTTTATGGGAAAGATTTGATCAAACTTAAAGATGTTGTCAACAATTTGTATAAAAACTCTGATCTGAAACCTT CACTAGTAGCACCGGGAGGATTTTTTGACAAGCAGTGGTATGCTAAGCTTCTTCAGGTTACAGGTTCAGGCATAGTCAACTTTGTAACTCATCATATATA CAACTTGGGAGCAGGCATGGATCCCAACCTTGTGAATAAGATATTGGATCCCCATTATTTGAGCAAGGTATCAGAAACCTTCAGTAATCTTTCACAAACG ATTCAACAGAATGGTCCTTGGGCTTCTGCTTGGGTTGGGGAATCTGGTGGGGCCTATAACAGTGGTGGTCGTCATGTTTCTGATACATTTGTGAACAGTT TCTGGTACTTAGATCAGCTTGGAATGGCATCCAGGTATAATACTAAAGTATACTGCAGGCAGACACTAGTTGGTGGCCACTATGGTCTCCTCAACACAAC CACACTGGTCCCCAATCCTGACTACTACAGCGCCCTTCTATGGCATCGACTAATGGGAAAAGGTGTTCTAGCTGTTGGAAGCAATGCTTCGCCATTTCTA CGCTCTTATGCCCATTGTTCGAAAGGAAGAGCAGGTATAACGTTACTGCTGATCAATTTAAGCAATCAGACTGATTTCATAATCAGTGTTCAAAATAGCA TGGACATGAGATTGACCGTGGAAGAAAACATATCTGGAGAAAACTCTTTCGTGCGTGGCCTCAAGAGATCAGTTTCATGGGTTGGGAGCCGAGCATCAGA TGAACCATTGTATAGAGAGGAGTACCATTTAACTGCAAAAGATGGGAACCTTCAAAGCCGAACCATGGTTCTTAATGGAATCCCGTTAGAGCTTACAGAA GATGAAAACATTCCGAGTCTGGACCCTGTCCGTCTTGATGTGAATTCTCCTTTATACATCAATCCTTTGTCGATTTCGTTCATCGTATTCCCAAACTTCG ATGCTCCAGCTTGTGCATGA
AA sequence Show only first row Show all	>Potri.015G049100.8 pacid=42775681 polypeptide=Potri.015G049100.8.p locus=Potri.015G049100 ID=Potri.015G049100.8.v4.1 annot-version=v4.1 MEFSFSLLLFLASFPVILAQEGTRATISIDGTIAVAVIDDNFICATLDWWPHDKCNYNQCPWSYSSVTNLDLSHPLLAKAIQAFRNLRIRIGGSLQDQVL YDVESLKAPCHPFRKMKGGLFGFSKGCLHMNRWDELNHLFSRTGAIVTFGLNALYGRHQIRKGVWGGAWDSSNACDFMNYTVLKGYKIDSWEYGNELSGS GVSASVSAELYGKDLIKLKDVVNNLYKNSDLKPSLVAPGGFFDKQWYAKLLQVTGSGIVNFVTHHIYNLGAGMDPNLVNKILDPHYLSKVSETFSNLSQT IQQNGPWASAWVGESGGAYNSGGRHVSDTFVNSFWYLDQLGMASRYNTKVYCRQTLVGGHYGLLNTTTLVPNPDYYSALLWHRLMGKGVLAVGSNASPFL RSYAHCSKGRAGITLLLINLSNQTDFIISVQNSMDMRLTVEENISGENSFVRGLKRSVSWVGSRASDEPLYREEYHLTAKDGNLQSRTMVLNGIPLELTE DENIPSLDPVRLDVNSPLYINPLSISFIVFPNFDAPACA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Potri.015G049100 [exp]	0	1
AT1G12460			Leucine-rich repeat protein ki...		Potri.001G114500 [exp]	5.09	0.8562
AT2G18890			Protein kinase superfamily pro...		Potri.006G166600 [exp]	7.14	0.8447
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Potri.001G190800 [exp]	8.00	0.8332	Pt-PRO1.1
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Potri.009G003100 [exp]	8.00	0.8208
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G237700 [exp]	22.80	0.8452
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G019000 [exp]	23.23	0.8216
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.002G052800 [exp]	28.98	0.8231
AT1G01540			Protein kinase superfamily pro...		Potri.014G088800 [exp]	45.92	0.7633
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Potri.001G211600 [exp]	48.14	0.8058
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.014G125000 [exp]	51.08	0.7901

Compare expression of checked genes

Potri.015G049100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.